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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1772/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
retrofit 1.9.0  (landing page)
Adam Park
Snapshot Date: 2025-10-26 13:45 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/retrofit
git_branch: devel
git_last_commit: 38c03ca
git_last_commit_date: 2025-04-15 13:14:30 -0400 (Tue, 15 Apr 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for retrofit on kjohnson3

To the developers/maintainers of the retrofit package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/retrofit.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: retrofit
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data retrofit
StartedAt: 2025-10-26 17:42:48 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 17:43:06 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 18.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data retrofit
###
##############################################################################
##############################################################################


* checking for file ‘retrofit/DESCRIPTION’ ... OK
* preparing ‘retrofit’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ColonVignette.Rmd’ using rmarkdown
2025-10-26 17:42:58.763 R[69802:551004365] XType: Using static font registry.

Quitting from ColonVignette.Rmd:162-166 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Recv failure: Connection reset by peer
---
Backtrace:
    ▆
 1. ├─png::readPNG(RCurl::getURLContent("https://user-images.githubusercontent.com/90921267/210159136-96b56551-f414-4b0b-921e-98f05a98c8bc.png"))
 2. ├─RCurl::getURLContent("https://user-images.githubusercontent.com/90921267/210159136-96b56551-f414-4b0b-921e-98f05a98c8bc.png")
 3. │ └─RCurl::curlPerform(url = url, curl = curl, .opts = .opts)
 4. └─RCurl (local) `<fn>`(35L, "Recv failure: Connection reset by peer", TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ColonVignette.Rmd' failed with diagnostics:
Recv failure: Connection reset by peer
--- failed re-building ‘ColonVignette.Rmd’

--- re-building ‘SimulationVignette.Rmd’ using rmarkdown
--- finished re-building ‘SimulationVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘ColonVignette.Rmd’

Error: Vignette re-building failed.
Execution halted