Sean K Maden
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/recountmethylation |
| git_branch: devel |
| git_last_commit: ca15d3a |
| git_last_commit_date: 2026-04-28 08:53:34 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1754/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| recountmethylation 1.23.0 (landing page) Sean K Maden
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for recountmethylation in R Universe. | ||||||||||||||
|
To the developers/maintainers of the recountmethylation package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recountmethylation.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: recountmethylation |
| Version: 1.23.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation |
| StartedAt: 2026-05-05 05:23:13 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 05:25:11 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 118.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation
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* checking for file ‘recountmethylation/DESCRIPTION’ ... OK
* preparing ‘recountmethylation’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cpg_probe_annotations.Rmd’ using rmarkdown
--- finished re-building ‘cpg_probe_annotations.Rmd’
--- re-building ‘exporting_saving_data.Rmd’ using rmarkdown
--- finished re-building ‘exporting_saving_data.Rmd’
--- re-building ‘recountmethylation_data_analyses.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_data_analyses.Rmd’
--- re-building ‘recountmethylation_glint.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_glint.Rmd’
--- re-building ‘recountmethylation_pwrewas.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_pwrewas.Rmd’
--- re-building ‘recountmethylation_search_index.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_search_index.Rmd’
--- re-building ‘recountmethylation_users_guide.Rmd’ using rmarkdown
Quitting from recountmethylation_users_guide.Rmd:28-37 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ExperimentHub'
---
Backtrace:
▆
1. ├─base::suppressMessages(library(ExperimentHub))
2. │ └─base::withCallingHandlers(...)
3. └─base::library(ExperimentHub)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'recountmethylation_users_guide.Rmd' failed with diagnostics:
there is no package called 'ExperimentHub'
--- failed re-building ‘recountmethylation_users_guide.Rmd’
SUMMARY: processing the following file failed:
‘recountmethylation_users_guide.Rmd’
Error: Vignette re-building failed.
Execution halted