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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4637 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1704/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ramr 1.17.1 (landing page) Oleksii Nikolaienko
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
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To the developers/maintainers of the ramr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ramr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ramr |
| Version: 1.17.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ramr |
| StartedAt: 2025-10-26 17:38:57 -0400 (Sun, 26 Oct 2025) |
| EndedAt: 2025-10-26 17:40:08 -0400 (Sun, 26 Oct 2025) |
| EllapsedTime: 70.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ramr
###
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* checking for file ‘ramr/DESCRIPTION’ ... OK
* preparing ‘ramr’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ramr.Rmd’ using rmarkdown
2025-10-26 17:39:13.015 R[41755:550947442] XType: Using static font registry.
Quitting from ramr.Rmd:250-259 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `value[[3L]]()`:
! failed to connect
reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
Consider rerunning with 'localHub=TRUE'
---
Backtrace:
▆
1. └─annotatr::build_annotations(genome = "hg19", annotations = annotation.types)
2. ├─base::suppressWarnings(build_cpg_annots(genome = genome, annotations = cpg_annotations))
3. │ └─base::withCallingHandlers(...)
4. └─annotatr:::build_cpg_annots(genome = genome, annotations = cpg_annotations)
5. └─AnnotationHub::AnnotationHub()
6. └─AnnotationHub::.Hub(...)
7. └─base::tryCatch(...)
8. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ramr.Rmd' failed with diagnostics:
failed to connect
reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘ramr.Rmd’
SUMMARY: processing the following file failed:
‘ramr.Rmd’
Error: Vignette re-building failed.
Execution halted