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This page was generated on 2025-11-15 11:35 -0500 (Sat, 15 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4826
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4561
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1238/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaseqR2 1.23.0  (landing page)
Panagiotis Moulos
Snapshot Date: 2025-11-14 13:40 -0500 (Fri, 14 Nov 2025)
git_url: https://git.bioconductor.org/packages/metaseqR2
git_branch: devel
git_last_commit: 25b9df1
git_last_commit_date: 2025-10-29 10:59:18 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for metaseqR2 on kjohnson3

To the developers/maintainers of the metaseqR2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: metaseqR2
Version: 1.23.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR2
StartedAt: 2025-11-14 16:53:33 -0500 (Fri, 14 Nov 2025)
EndedAt: 2025-11-14 16:57:50 -0500 (Fri, 14 Nov 2025)
EllapsedTime: 256.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR2
###
##############################################################################
##############################################################################


* checking for file ‘metaseqR2/DESCRIPTION’ ... OK
* preparing ‘metaseqR2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘metaseqr2-annotation.Rmd’ using rmarkdown
--- finished re-building ‘metaseqr2-annotation.Rmd’

--- re-building ‘metaseqr2-statistics.Rmd’ using rmarkdown
2025-11-14 16:54:52.618 R[29979:28036820] XType: Using static font registry.
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  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/lengthbias_normalized.png (deflated 10%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/lengthbias_raw.png (deflated 8%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 5%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 5%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meanvar_normalized.png (deflated 7%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meanvar_raw.png (deflated 8%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 10%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 9%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 5%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 13%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/qc/correlation_correlogram.pdf (deflated 4%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/qc/correlation_heatmap.pdf (deflated 26%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/qc/correlation_pairs.pdf (deflated 4%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/qc/filtered_genes.pdf (deflated 7%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/qc/mds.pdf (deflated 12%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/boxplot_normalized.pdf (deflated 12%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/boxplot_raw.pdf (deflated 12%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/gcbias_normalized.pdf (deflated 4%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/gcbias_raw.pdf (deflated 4%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/lengthbias_normalized.pdf (deflated 2%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/lengthbias_raw.pdf (deflated 1%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 21%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 21%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meanvar_normalized.pdf (deflated 30%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/normalization/meanvar_raw.pdf (deflated 39%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 10%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%)
  adding: var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmprT1zmt/test3/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%)
trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js'
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