Multiple platform build/check report for BioC 3.23 - BUILD results for knowYourCG on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4869
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4576
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for knowYourCG on kjohnson3

To the developers/maintainers of the knowYourCG package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/knowYourCG.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: knowYourCG

Version: 1.7.3

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data knowYourCG

StartedAt: 2025-12-03 16:49:10 -0500 (Wed, 03 Dec 2025)

EndedAt: 2025-12-03 16:50:26 -0500 (Wed, 03 Dec 2025)

EllapsedTime: 75.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data knowYourCG
###
##############################################################################
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* checking for file ‘knowYourCG/DESCRIPTION’ ... OK
* preparing ‘knowYourCG’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Array.Rmd’ using rmarkdown
--- finished re-building ‘Array.Rmd’

--- re-building ‘Continuous.Rmd’ using rmarkdown
--- finished re-building ‘Continuous.Rmd’

--- re-building ‘Sequencing.Rmd’ using rmarkdown
trying URL 'https://github.com/zhou-lab/KYCGKB_mm10/raw/refs/heads/main/ChromHMM.20220414.cm'
Content type 'application/octet-stream' length 877986 bytes (857 KB)
==================================================
downloaded 857 KB

trying URL 'https://github.com/zhou-lab/YAME/raw/refs/heads/main/test/input/single_cell_10_samples.cg'
Content type 'application/octet-stream' length 11610328 bytes (11.1 MB)
==================================================
downloaded 11.1 MB


Quitting from Sequencing.Rmd:38-54 [seq1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `inferPlatformFromProbeIDs()`:
! Ambiguous platform. Please provide platform explicitly.
---
Backtrace:
    ▆
 1. └─knowYourCG::testEnrichment(query, knowledgebase)
 2.   └─knowYourCG:::queryCheckPlatform(platform, query, silent = silent)
 3.     └─sesameData::inferPlatformFromProbeIDs(query, silent = silent)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Sequencing.Rmd' failed with diagnostics:
Ambiguous platform. Please provide platform explicitly.
--- failed re-building ‘Sequencing.Rmd’

--- re-building ‘visualization.Rmd’ using rmarkdown
2025-12-03 16:50:04.010 R[39500:256757774] XType: Using static font registry.
--- finished re-building ‘visualization.Rmd’

SUMMARY: processing the following file failed:
  ‘Sequencing.Rmd’

Error: Vignette re-building failed.
Execution halted