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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 intansv
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* checking for file ‘intansv/DESCRIPTION’ ... OK
* preparing ‘intansv’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘intansvOverview.Rnw’ using Sweave
Loading required package: plyr
Loading required package: ggbio
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: ‘generics’
The following objects are masked from ‘package:base’:
as.difftime, as.factor, as.ordered, intersect, is.element,
setdiff, setequal, union
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,
append, as.data.frame, basename, cbind, colnames, dirname,
do.call, duplicated, eval, evalq, get, grep, grepl,
is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames,
sapply, saveRDS, table, tapply, unique, unsplit, which.max,
which.min
Loading required package: ggplot2
Need specific help about ggbio? try mailing
the maintainer or visit https://lawremi.github.io/ggbio/
Attaching package: 'ggbio'
The following objects are masked from 'package:ggplot2':
geom_bar, geom_rect, geom_segment, ggsave, stat_bin,
stat_identity, xlim
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:plyr':
rename
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:plyr':
desc
Loading required package: Seqinfo
Error: processing vignette 'intansvOverview.Rnw' failed with diagnostics:
chunk 15 (label = genomic_distribution)
Error in validObject(.Object) :
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
--- failed re-building 'intansvOverview.Rnw'
SUMMARY: processing the following file failed:
'intansvOverview.Rnw'
Error: Vignette re-building failed.
Execution halted