Tyler Smith
| Snapshot Date: 2026-05-18 13:45 -0400 (Mon, 18 May 2026) |
| git_url: https://git.bioconductor.org/packages/flowPloidy |
| git_branch: devel |
| git_last_commit: 57a344b |
| git_last_commit_date: 2026-04-28 08:44:24 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-19 12:54 -0400 (Tue, 19 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4898 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4617 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 771/2377 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowPloidy 1.39.0 (landing page) Tyler Smith
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | ||||||||||
| See other builds for flowPloidy in R Universe. | ||||||||||||||
|
To the developers/maintainers of the flowPloidy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPloidy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: flowPloidy |
| Version: 1.39.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy |
| StartedAt: 2026-05-18 18:04:28 -0400 (Mon, 18 May 2026) |
| EndedAt: 2026-05-18 18:04:40 -0400 (Mon, 18 May 2026) |
| EllapsedTime: 12.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy
###
##############################################################################
##############################################################################
* checking for file ‘flowPloidy/DESCRIPTION’ ... OK
* preparing ‘flowPloidy’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘flowPloidy-gettingStarted.Rmd’ using rmarkdown
! LaTeX Error: Lonely \item--perhaps a missing list environment.
Error: processing vignette 'flowPloidy-gettingStarted.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmpv38V80/Rbuild2087359fd23/flowPloidy/vignettes/flowPloidy-gettingStarted.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See flowPloidy-gettingStarted.log for more info.
--- failed re-building ‘flowPloidy-gettingStarted.Rmd’
--- re-building ‘histogram-tour.Rmd’ using rmarkdown
! Undefined control sequence.
l.126 \pandocbounded
{\includegraphics[keepaspectratio]{/private/var/folders/...
Error: processing vignette 'histogram-tour.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmpv38V80/Rbuild2087359fd23/flowPloidy/vignettes/histogram-tour.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See histogram-tour.log for more info.
--- failed re-building ‘histogram-tour.Rmd’
SUMMARY: processing the following files failed:
‘flowPloidy-gettingStarted.Rmd’ ‘histogram-tour.Rmd’
Error: Vignette re-building failed.
Execution halted