Anestis Gkanogiannis
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/fastreeR |
| git_branch: devel |
| git_last_commit: a85f8f1 |
| git_last_commit_date: 2026-04-30 04:06:08 -0400 (Thu, 30 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 720/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fastreeR 2.3.0 (landing page) Anestis Gkanogiannis
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for fastreeR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the fastreeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastreeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: fastreeR |
| Version: 2.3.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fastreeR |
| StartedAt: 2026-05-05 03:01:42 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 03:04:14 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 152.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fastreeR
###
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* checking for file ‘fastreeR/DESCRIPTION’ ... OK
* preparing ‘fastreeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fastreeR_vignette.Rmd’ using rmarkdown
VCF2ISTATS
Version: 2.7.1
Build Time: 2026-04-24T22:21:45Z
Num of Ind = 150
VCF2DIST
Version: 2.7.1
Build Time: 2026-04-24T22:21:45Z
150 0
VCF2TREE
Version: 2.7.1
Build Time: 2026-04-24T22:21:45Z
VCF2TREE
Version: 2.7.1
Build Time: 2026-04-24T22:21:45Z
Quitting from fastreeR_vignette.Rmd:340-367 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get()`:
! object 'ggtree' not found
---
Backtrace:
▆
1. ├─base::print(p)
2. └─ggtree:::print.ggtree(p)
3. └─ggtree:::is_ggtree_interactive()
4. └─yulab.utils::get_cache_item("ggtree")
5. └─base::get(item, envir = env, inherits = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fastreeR_vignette.Rmd' failed with diagnostics:
object 'ggtree' not found
--- failed re-building ‘fastreeR_vignette.Rmd’
SUMMARY: processing the following file failed:
‘fastreeR_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted