Build/check report for BioC 3.22 - BUILD results for epivizrChart on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4637
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for epivizrChart on kjohnson3

To the developers/maintainers of the epivizrChart package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epivizrChart.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: epivizrChart

Version: 1.31.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epivizrChart

StartedAt: 2025-10-26 16:24:41 -0400 (Sun, 26 Oct 2025)

EndedAt: 2025-10-26 16:31:01 -0400 (Sun, 26 Oct 2025)

EllapsedTime: 380.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epivizrChart
###
##############################################################################
##############################################################################


* checking for file ‘epivizrChart/DESCRIPTION’ ... OK
* preparing ‘epivizrChart’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘IntegrationWithIGVjs.Rmd’ using rmarkdown
--- finished re-building ‘IntegrationWithIGVjs.Rmd’

--- re-building ‘IntegrationWithShiny.Rmd’ using rmarkdown
--- finished re-building ‘IntegrationWithShiny.Rmd’

--- re-building ‘IntroToEpivizrChart.Rmd’ using rmarkdown

Quitting from IntroToEpivizrChart.Rmd:350-354 [unnamed-chunk-25]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `value[[3L]]()`:
! failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
  Consider rerunning with 'localHub=TRUE'
---
Backtrace:
    ▆
 1. └─AnnotationHub::AnnotationHub()
 2.   └─AnnotationHub::.Hub(...)
 3.     └─base::tryCatch(...)
 4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 6.           └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'IntroToEpivizrChart.Rmd' failed with diagnostics:
failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘IntroToEpivizrChart.Rmd’

--- re-building ‘VisualizeSumExp.Rmd’ using rmarkdown
--- finished re-building ‘VisualizeSumExp.Rmd’

SUMMARY: processing the following file failed:
  ‘IntroToEpivizrChart.Rmd’

Error: Vignette re-building failed.
Execution halted