Johannes Rainer
| Snapshot Date: 2026-03-08 13:40 -0400 (Sun, 08 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/ensembldb |
| git_branch: devel |
| git_last_commit: a74ca18 |
| git_last_commit_date: 2025-10-29 10:24:50 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:34 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 678/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ensembldb 2.35.0 (landing page) Johannes Rainer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for ensembldb in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ensembldb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ensembldb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ensembldb |
| Version: 2.35.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ensembldb |
| StartedAt: 2026-03-08 15:38:52 -0400 (Sun, 08 Mar 2026) |
| EndedAt: 2026-03-08 15:39:22 -0400 (Sun, 08 Mar 2026) |
| EllapsedTime: 29.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ensembldb
###
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* checking for file ‘ensembldb/DESCRIPTION’ ... OK
* preparing ‘ensembldb’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MySQL-backend.Rmd’ using rmarkdown
--- finished re-building ‘MySQL-backend.Rmd’
--- re-building ‘coordinate-mapping-use-cases.Rmd’ using rmarkdown
Quitting from coordinate-mapping-use-cases.Rmd:162-182 [olig-plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Gviz'
---
Backtrace:
▆
1. └─base::library(Gviz)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'coordinate-mapping-use-cases.Rmd' failed with diagnostics:
there is no package called 'Gviz'
--- failed re-building ‘coordinate-mapping-use-cases.Rmd’
--- re-building ‘coordinate-mapping.Rmd’ using rmarkdown
Quitting from coordinate-mapping.Rmd:128-146 [genomeToTranscript-ex1-plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Gviz'
---
Backtrace:
▆
1. └─base::library(Gviz)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'coordinate-mapping.Rmd' failed with diagnostics:
there is no package called 'Gviz'
--- failed re-building ‘coordinate-mapping.Rmd’
--- re-building ‘ensembldb.Rmd’ using rmarkdown
2026-03-08 15:39:17.385 R[67532:117234748] XType: Using static font registry.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpyJbiPL/Rbuild1029e53ddc772/ensembldb/vignettes/ensembldb_files/figure-html/granges-zbtb16-1.png" but not available.
Quitting from ensembldb.Rmd:670-691 [gviz-plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'Gviz'
---
Backtrace:
▆
1. └─base::library(Gviz)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ensembldb.Rmd' failed with diagnostics:
there is no package called 'Gviz'
--- failed re-building ‘ensembldb.Rmd’
--- re-building ‘proteins.Rmd’ using rmarkdown
--- finished re-building ‘proteins.Rmd’
SUMMARY: processing the following files failed:
‘coordinate-mapping-use-cases.Rmd’ ‘coordinate-mapping.Rmd’
‘ensembldb.Rmd’
Error: Vignette re-building failed.
Execution halted