Back to Multiple platform build/check report for BioC 3.23:   simplified   long
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This page was generated on 2026-01-05 11:35 -0500 (Mon, 05 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" 4815
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4593
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 667/2332HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichViewNet 1.9.1  (landing page)
Astrid Deschênes
Snapshot Date: 2026-01-04 13:40 -0500 (Sun, 04 Jan 2026)
git_url: https://git.bioconductor.org/packages/enrichViewNet
git_branch: devel
git_last_commit: 9d4d7b1
git_last_commit_date: 2025-12-31 18:03:47 -0500 (Wed, 31 Dec 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for enrichViewNet on kjohnson3

To the developers/maintainers of the enrichViewNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/enrichViewNet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: enrichViewNet
Version: 1.9.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings enrichViewNet_1.9.1.tar.gz
StartedAt: 2026-01-04 19:41:43 -0500 (Sun, 04 Jan 2026)
EndedAt: 2026-01-04 19:43:23 -0500 (Sun, 04 Jan 2026)
EllapsedTime: 99.1 seconds
RetCode: 0
Status:   OK  
CheckDir: enrichViewNet.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings enrichViewNet_1.9.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/enrichViewNet.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘enrichViewNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘enrichViewNet’ version ‘1.9.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enrichViewNet’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

enrichViewNet.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL enrichViewNet
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘enrichViewNet’ ...
** this is package ‘enrichViewNet’ version ‘1.9.1’
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (enrichViewNet)

Tests output

enrichViewNet.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(enrichViewNet)

> 
> ## Run all unit tests
> test_check("enrichViewNet")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 214 ]
> 
> proc.time()
   user  system elapsed 
  3.694   0.277  17.004 

Example timings

enrichViewNet.Rcheck/enrichViewNet-Ex.timings

nameusersystemelapsed
createBasicEmap0.3670.0110.400
createBasicEmapAsIgraph0.0240.0010.034
createCXJSONForCytoscape0.0310.0010.032
createCompareResultDataFrame0.0060.0020.008
createEnrichMap0.1850.0040.211
createEnrichMapAsIgraph0.1500.0080.168
createEnrichMapMultiBasic0.5020.0110.532
createEnrichMapMultiBasicAsIgraph0.2110.0090.227
createEnrichMapMultiComplex0.4760.0060.497
createEnrichMapMultiComplexAsIgraph0.2470.0070.255
createMetaDataSectionCXJSON0.0010.0000.001
createMultiEmap0.3010.0050.315
createMultiEmapAsIgraph0.0250.0010.027
createNetwork0.0220.0040.048
createNetworkForCytoscape0.0100.0010.012
demoGOST0.0120.0032.094
extractInformationWhenIntersection0.0080.0010.009
extractInformationWhenNoIntersection0.0760.0114.022
extractNodesAndEdgesInformation0.0080.0010.009
filterResults0.0010.0000.002
formatInformationForCXJSON0.0110.0010.011
isCytoscapeRunning0.0010.0000.001
manageNameDuplicationInEmap0.0010.0000.001
manageQueryDuplicationInEmap000
parentalNapaVsDMSODEG0.0880.0043.061
parentalNapaVsDMSOEnrichment0.1530.0020.163
removeRootTerm0.0010.0000.003
rosaNapaVsDMSODEG0.0710.0043.876
rosaNapaVsDMSOEnrichment0.1300.0010.130
similarityJaccard0.0010.0000.001
validateCreateEnrichMapArguments0.0010.0000.002
validateCreateEnrichMapAsIgraphArg0.0000.0010.001
validateCreateEnrichMapMultiBasicArgs0.0040.0010.006
validateCreateEnrichMapMultiBasicAsIgraphArgs0.0040.0020.005
validateCreateEnrichMapMultiBasicGOSTArgs0.0030.0010.005
validateCreateEnrichMapMultiComplexArg0.0040.0010.005
validateCreateEnrichMapMultiComplexAsIgraphArg0.0050.0020.006
validateCreateEnrichMapMultiComplexGostPartOne0.0040.0010.005
validateCreateEnrichMapMultiComplexGostPartTwo0.0040.0010.005
validateCreateEnrichMapSubSectionArguments000
validateCreateNetworkArguments0.0000.0000.001