| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4866 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 357/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| chopsticks 1.77.0 (landing page) Hin-Tak Leung
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for chopsticks in R Universe. | ||||||||||||||
|
To the developers/maintainers of the chopsticks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chopsticks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: chopsticks |
| Version: 1.77.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chopsticks |
| StartedAt: 2026-03-20 17:47:15 -0400 (Fri, 20 Mar 2026) |
| EndedAt: 2026-03-20 17:47:17 -0400 (Fri, 20 Mar 2026) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chopsticks
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘chopsticks’ ...
** this is package ‘chopsticks’ version ‘1.77.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c adler32.c -o adler32.o
adler32.c:57:23: error: unknown type name 'adler'
57 | uLong ZEXPORT adler32(adler, buf, len)
| ^
adler32.c:57:30: error: unknown type name 'buf'
57 | uLong ZEXPORT adler32(adler, buf, len)
| ^
adler32.c:57:35: error: unknown type name 'len'
57 | uLong ZEXPORT adler32(adler, buf, len)
| ^
adler32.c:57:39: error: expected ';' after top level declarator
57 | uLong ZEXPORT adler32(adler, buf, len)
| ^
| ;
adler32.c:61:1: error: expected identifier or '('
61 | {
| ^
adler32.c:128:31: error: unknown type name 'adler1'
128 | uLong ZEXPORT adler32_combine(adler1, adler2, len2)
| ^
adler32.c:128:39: error: unknown type name 'adler2'
128 | uLong ZEXPORT adler32_combine(adler1, adler2, len2)
| ^
adler32.c:128:47: error: unknown type name 'len2'
128 | uLong ZEXPORT adler32_combine(adler1, adler2, len2)
| ^
adler32.c:128:52: error: expected ';' after top level declarator
128 | uLong ZEXPORT adler32_combine(adler1, adler2, len2)
| ^
| ;
adler32.c:132:1: error: expected identifier or '('
132 | {
| ^
10 errors generated.
make: *** [adler32.o] Error 1
ERROR: compilation failed for package ‘chopsticks’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/chopsticks’