Beth Signal
| Snapshot Date: 2026-05-21 13:45 -0400 (Thu, 21 May 2026) |
| git_url: https://git.bioconductor.org/packages/branchpointer |
| git_branch: devel |
| git_last_commit: 79e9a91 |
| git_last_commit_date: 2026-04-28 08:45:16 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-22 11:36 -0400 (Fri, 22 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4936 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4621 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 248/2378 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| branchpointer 1.39.0 (landing page) Beth Signal
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | | |||||||||
| See other builds for branchpointer in R Universe. | ||||||||||||||
|
To the developers/maintainers of the branchpointer package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/branchpointer.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: branchpointer |
| Version: 1.39.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 branchpointer |
| StartedAt: 2026-05-21 16:38:25 -0400 (Thu, 21 May 2026) |
| EndedAt: 2026-05-21 16:45:13 -0400 (Thu, 21 May 2026) |
| EllapsedTime: 408.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 branchpointer
###
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* checking for file ‘branchpointer/DESCRIPTION’ ... OK
* preparing ‘branchpointer’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘branchpointer.Rnw’ using knitr
Quitting from branchpointer.Rnw:219-227 [read_snp_mart]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_500>
Error in `req_perform()`:
! HTTP 500 Internal Server Error.
---
Backtrace:
x
1. \-biomaRt::useMart(...)
2. \-biomaRt:::.useMart(...)
3. \-biomaRt:::.listMarts(...)
4. \-biomaRt:::bmRequest(...)
5. \-httr2::req_perform(request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'branchpointer.Rnw' failed with diagnostics:
HTTP 500 Internal Server Error.
--- failed re-building ‘branchpointer.Rnw’
SUMMARY: processing the following file failed:
‘branchpointer.Rnw’
Error: Vignette re-building failed.
Execution halted