Multiple platform build/check report for BioC 3.22 - BUILD results for TDbasedUFEadv on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4827
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4614
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4558
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4560
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for TDbasedUFEadv on nebbiolo2

To the developers/maintainers of the TDbasedUFEadv package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TDbasedUFEadv.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: TDbasedUFEadv

Version: 1.9.1

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 TDbasedUFEadv

StartedAt: 2025-09-23 20:26:45 -0400 (Tue, 23 Sep 2025)

EndedAt: 2025-09-23 20:38:28 -0400 (Tue, 23 Sep 2025)

EllapsedTime: 703.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 TDbasedUFEadv
###
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* checking for file ‘TDbasedUFEadv/DESCRIPTION’ ... OK
* preparing ‘TDbasedUFEadv’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Enrichment.Rmd’ using rmarkdown

Quitting from Enrichment.Rmd:92-106 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [maayanlab.cloud]:
Operation too slow. Less than 1 bytes/sec transferred the last 600 seconds
---
Backtrace:
    ▆
 1. └─enrichR::enrichr(genes, dbs)
 2.   └─enrichR:::getEnrichr(...)
 3.     └─base::tryCatch(...)
 4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 5.         └─base (local) tryCatchOne(...)
 6.           └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Enrichment.Rmd' failed with diagnostics:
Timeout was reached [maayanlab.cloud]:
Operation too slow. Less than 1 bytes/sec transferred the last 600 seconds
--- failed re-building ‘Enrichment.Rmd’

--- re-building ‘Explanation_of_TDbasedUFEadv.Rmd’ using rmarkdown
--- finished re-building ‘Explanation_of_TDbasedUFEadv.Rmd’

--- re-building ‘How_to_use_TDbasedUFEadv.Rmd’ using rmarkdown
--- finished re-building ‘How_to_use_TDbasedUFEadv.Rmd’

SUMMARY: processing the following file failed:
  ‘Enrichment.Rmd’

Error: Vignette re-building failed.
Execution halted