| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-20 12:05 -0400 (Sat, 20 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4814 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4603 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4547 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4553 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2118/2333 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Structstrings 1.25.0 (landing page) Felix G.M. Ernst
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the Structstrings package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Structstrings.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Structstrings |
| Version: 1.25.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Structstrings |
| StartedAt: 2025-09-19 15:16:55 -0400 (Fri, 19 Sep 2025) |
| EndedAt: 2025-09-19 15:16:58 -0400 (Fri, 19 Sep 2025) |
| EllapsedTime: 3.3 seconds |
| RetCode: 1 |
| Status: ERROR |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Structstrings
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘Structstrings’ ...
** this is package ‘Structstrings’ version ‘1.25.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DotBracketDataFrame_class.c -o DotBracketDataFrame_class.o
DotBracketDataFrame_class.c:8:17: error: implicit declaration of function 'new_DataFrame' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
PROTECT(ans = new_DataFrame("DotBracketDFrame",
^
DotBracketDataFrame_class.c:8:17: note: did you mean 'new_DFrame'?
/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/S4Vectors/include/S4Vectors_interface.h:750:6: note: 'new_DFrame' declared here
SEXP new_DFrame(
^
DotBracketDataFrame_class.c:8:15: warning: incompatible integer to pointer conversion assigning to 'SEXP' (aka 'struct SEXPREC *') from 'int' [-Wint-conversion]
PROTECT(ans = new_DataFrame("DotBracketDFrame",
~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
1 warning and 1 error generated.
make: *** [DotBracketDataFrame_class.o] Error 1
ERROR: compilation failed for package ‘Structstrings’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Structstrings’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Structstrings’