| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-07 11:36 -0400 (Tue, 07 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4630 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" | 4541 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2139/2381 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Qian Liu
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| See other builds for SQLDataFrame in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SQLDataFrame package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SQLDataFrame.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SQLDataFrame |
| Version: 1.25.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SQLDataFrame.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SQLDataFrame_1.25.1.tar.gz |
| StartedAt: 2026-04-07 05:25:19 -0400 (Tue, 07 Apr 2026) |
| EndedAt: 2026-04-07 05:25:24 -0400 (Tue, 07 Apr 2026) |
| EllapsedTime: 5.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: SQLDataFrame.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SQLDataFrame.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SQLDataFrame_1.25.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/SQLDataFrame.Rcheck’
* using R version 4.6.0 alpha (2026-04-05 r89794)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-07 09:25:19 UTC
* checking for file ‘SQLDataFrame/DESCRIPTION’ ... OK
* this is package ‘SQLDataFrame’ version ‘1.25.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SQLDataFrame’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.23-bioc/meat/SQLDataFrame.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.23-bioc/meat/SQLDataFrame.Rcheck/00check.log’
for details.
SQLDataFrame.Rcheck/00install.out
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL SQLDataFrame
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
ERROR: dependency ‘duckdb’ is not available for package ‘SQLDataFrame’
Perhaps try a variation of:
install.packages('duckdb')
* removing ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/SQLDataFrame’