Build/check report for BioC 3.24 - BUILD results for RCAS on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4843
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BUILD results for RCAS on nebbiolo2

To the developers/maintainers of the RCAS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCAS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RCAS

Version: 1.39.0

Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RCAS

StartedAt: 2026-04-28 20:33:48 -0400 (Tue, 28 Apr 2026)

EndedAt: 2026-04-28 20:35:48 -0400 (Tue, 28 Apr 2026)

EllapsedTime: 120.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RCAS
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* checking for file ‘RCAS/DESCRIPTION’ ... OK
* preparing ‘RCAS’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘RCAS.metaAnalysis.vignette.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "How to do meta-analysis of multiple samples", and the latter is "How to do meta-analysis of CLIP-seq peaks from multiple samples with RCAS". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘RCAS.metaAnalysis.vignette.Rmd’

--- re-building ‘RCAS.vignette.Rmd’ using rmarkdown
Error in x$.self$finalize() : attempt to apply non-function
Warning: call dbDisconnect() when finished working with a connection

Quitting from RCAS.vignette.Rmd:222-229 [motif_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unknown Bioconductor version '3.24'; see https://bioconductor.org/install
---
Backtrace:
     ▆
  1. └─RCAS::runMotifDiscovery(...)
  2.   └─RCAS::extractSequences(queryRegions, genomeVersion)
  3.     └─RCAS::checkSeqDb(genomeVersion)
  4.       └─BSgenome::available.genomes()
  5.         └─BSgenome:::get_data_annotation_contrib_url(type)
  6.           ├─utils::contrib.url(BiocManager::repositories()["BioCann"], type = type)
  7.           └─BiocManager::repositories()
  8.             └─BiocManager:::.version_validate(version)
  9.               ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt))
 10.               └─BiocManager:::.stop(txt)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RCAS.vignette.Rmd' failed with diagnostics:
unknown Bioconductor version '3.24'; see https://bioconductor.org/install
--- failed re-building ‘RCAS.vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘RCAS.vignette.Rmd’

Error: Vignette re-building failed.
Execution halted