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This page was generated on 2026-04-18 11:36 -0400 (Sat, 18 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4957
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4686
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4627
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1405/2404HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MsExperiment 1.13.1  (landing page)
Laurent Gatto
Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026)
git_url: https://git.bioconductor.org/packages/MsExperiment
git_branch: devel
git_last_commit: 19ec01c
git_last_commit_date: 2026-02-06 08:10:54 -0400 (Fri, 06 Feb 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped
See other builds for MsExperiment in R Universe.

BUILD results for MsExperiment on nebbiolo1

To the developers/maintainers of the MsExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MsExperiment
Version: 1.13.1
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment
StartedAt: 2026-04-17 19:03:34 -0400 (Fri, 17 Apr 2026)
EndedAt: 2026-04-17 19:04:16 -0400 (Fri, 17 Apr 2026)
EllapsedTime: 42.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment
###
##############################################################################
##############################################################################


* checking for file ‘MsExperiment/DESCRIPTION’ ... OK
* preparing ‘MsExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MsExperiment.Rmd’ using rmarkdown

Quitting from MsExperiment.Rmd:96-100 [fls]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fix_issue_17()`:
! Can't access URL(s):
 ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
 ftp://ftp.pride.ebi.ac.uk/pride-archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
---
Backtrace:
    ▆
 1. ├─rpx::pxget(px, i)
 2. └─rpx::pxget(px, i)
 3.   └─rpx (local) .local(object, ...)
 4.     └─rpx:::pxget1(uris[i], cache)
 5.       └─rpx:::get_url(url)
 6.         └─rpx:::fix_issue_17(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MsExperiment.Rmd' failed with diagnostics:
Can't access URL(s):
 ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
 ftp://ftp.pride.ebi.ac.uk/pride-archive/2021/03/PXD022816/QEP2LC6_HeLa_50ng_251120_01-calib.mzML
--- failed re-building ‘MsExperiment.Rmd’

SUMMARY: processing the following file failed:
  ‘MsExperiment.Rmd’

Error: Vignette re-building failed.
Execution halted