| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-04-29 10:00 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4843 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1397/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MSstats 4.21.0 (landing page) Meena Choi
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for MSstats in R Universe. | ||||||||||||||
|
To the developers/maintainers of the MSstats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MSstats |
| Version: 4.21.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 MSstats |
| StartedAt: 2026-04-28 19:57:24 -0400 (Tue, 28 Apr 2026) |
| EndedAt: 2026-04-28 19:58:27 -0400 (Tue, 28 Apr 2026) |
| EllapsedTime: 63.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 MSstats
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* checking for file ‘MSstats/DESCRIPTION’ ... OK
* preparing ‘MSstats’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MSstats.Rmd’ using knitr
--- finished re-building ‘MSstats.Rmd’
--- re-building ‘MSstatsPlus.Rmd’ using knitr
Warning in for (scale in candidates) { :
closing unused connection 5 (<-localhost:11373)
Warning in for (i in 1L:d2) { :
closing unused connection 5 (<-localhost:11373)
--- finished re-building ‘MSstatsPlus.Rmd’
--- re-building ‘MSstatsWorkflow.Rmd’ using knitr
Quitting from MSstatsWorkflow.Rmd:53-60 [code Installation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unknown Bioconductor version '3.24'; see https://bioconductor.org/install
---
Backtrace:
▆
1. └─BiocManager::install("MSstats")
2. └─BiocManager:::.version_validate(version)
3. ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt))
4. └─BiocManager:::.stop(txt)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MSstatsWorkflow.Rmd' failed with diagnostics:
unknown Bioconductor version '3.24'; see https://bioconductor.org/install
--- failed re-building ‘MSstatsWorkflow.Rmd’
SUMMARY: processing the following file failed:
‘MSstatsWorkflow.Rmd’
Error: Vignette re-building failed.
Execution halted