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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HiSpaR
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘HiSpaR’ ...
** this is package ‘HiSpaR’ version ‘0.99.5’
** using staged installation
Configuring HiSpaR for platform: Linux
  Detected Linux
  Found Armadillo via pkg-config
Checking for OpenMP support...
  OpenMP support: NO
  WARNING: OpenMP is required for HiSpaR. Package may not function correctly.
Writing src/Makevars
Configuration complete
** libs
specified C++17
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I../inst/include  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fopenmp -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I../inst/include  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fopenmp -fpic  -g -O2  -Wall -Werror=format-security  -c chromosome.cpp -o chromosome.o
chromosome.cpp: In member function ‘void Chromosome::assign_clusters(int)’:
chromosome.cpp:155:19: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  155 |         if (label >= num_clusters) {
      |             ~~~~~~^~~~~~~~~~~~~~~
chromosome.cpp: In member function ‘void Chromosome::build_cluster_relationships_by_distance(int)’:
chromosome.cpp:335:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  335 |     for (int c = 0; c < num_clusters; ++c) {
      |                     ~~^~~~~~~~~~~~~~
chromosome.cpp:339:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  339 |         for (int other_c = 0; other_c < num_clusters; ++other_c) {
      |                               ~~~~~~~~^~~~~~~~~~~~~~
chromosome.cpp: In member function ‘void Chromosome::log_memory_usage()’:
chromosome.cpp:1270:24: warning: unused variable ‘memory_mb’ [-Wunused-variable]
 1270 |                 double memory_mb = static_cast<double>(memory_kb) / 1024.0;
      |                        ^~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I../inst/include  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fopenmp -fpic  -g -O2  -Wall -Werror=format-security  -c hispa_rcpp.cpp -o hispa_rcpp.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o HiSpaR.so RcppExports.o chromosome.o hispa_rcpp.o -larmadillo -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-HiSpaR/00new/HiSpaR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiSpaR)