Multiple platform build/check report for BioC 3.24 - BUILD results for DeeDeeExperiment on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4878
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4663
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DeeDeeExperiment on taishan

To the developers/maintainers of the DeeDeeExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeeDeeExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: DeeDeeExperiment

Version: 1.3.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data DeeDeeExperiment

StartedAt: 2026-05-05 02:39:40 -0000 (Tue, 05 May 2026)

EndedAt: 2026-05-05 02:40:48 -0000 (Tue, 05 May 2026)

EllapsedTime: 68.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data DeeDeeExperiment
###
##############################################################################
##############################################################################


* checking for file ‘DeeDeeExperiment/DESCRIPTION’ ... OK
* preparing ‘DeeDeeExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DeeDeeExperiment_manual.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'DOSE''

Quitting from DeeDeeExperiment_manual.Rmd:470-473 [clusterPro]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.requirePackage()`:
! unable to load required package 'DOSE'
---
Backtrace:
    ▆
 1. └─utils::head(clusterPro_res$ifng_vs_naive)
 2.   └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
 3.     └─methods:::.findInheritedMethods(classes, fdef, mtable)
 4.       └─methods::getClass(cl1, where = where, .Force = TRUE)
 5.         └─methods::getClassDef(Class, where)
 6.           └─methods:::.requirePackage(package)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DeeDeeExperiment_manual.Rmd' failed with diagnostics:
unable to load required package 'DOSE'
--- failed re-building ‘DeeDeeExperiment_manual.Rmd’

--- re-building ‘dde_with_single_cell.Rmd’ using rmarkdown

Quitting from dde_with_single_cell.Rmd:72-78 [loadlib]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. └─base::library("ExperimentHub")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'dde_with_single_cell.Rmd' failed with diagnostics:
there is no package called 'ExperimentHub'
--- failed re-building ‘dde_with_single_cell.Rmd’

SUMMARY: processing the following files failed:
  ‘DeeDeeExperiment_manual.Rmd’ ‘dde_with_single_cell.Rmd’

Error: Vignette re-building failed.
Execution halted