Steffen Neumann
| Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/CAMERA |
| git_branch: devel |
| git_last_commit: 340928f |
| git_last_commit_date: 2025-10-29 10:02:23 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 278/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CAMERA 1.67.0 (landing page) Steffen Neumann
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
| See other builds for CAMERA in R Universe. | ||||||||||||||
|
To the developers/maintainers of the CAMERA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAMERA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: CAMERA |
| Version: 1.67.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL CAMERA |
| StartedAt: 2026-04-16 20:59:05 -0000 (Thu, 16 Apr 2026) |
| EndedAt: 2026-04-16 20:59:11 -0000 (Thu, 16 Apr 2026) |
| EllapsedTime: 5.5 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL CAMERA
###
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* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘CAMERA’ ...
** this is package ‘CAMERA’ version ‘1.67.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c fastMatch.c -o fastMatch.o
fastMatch.c: In function ‘fastMatch’:
fastMatch.c:65:68: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=]
65 | error("fastMatch/calloc: memory could not be allocated ! (%d bytes)\n", nx * sizeof(struct idxStruct) );
| ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| int long unsigned int
| %ld
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o CAMERA.so fastMatch.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-CAMERA/00new/CAMERA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘xcms’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/biocbuild/R/R-devel_2025-02-19/site-library/ncdf4/libs/ncdf4.so':
libnetcdf.so.19: cannot open shared object file: No such file or directory
Execution halted
ERROR: lazy loading failed for package ‘CAMERA’
* removing ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/CAMERA’
* restoring previous ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/CAMERA’