| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:33 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 265/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BUSpaRse 1.25.0 (landing page) Lambda Moses
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for BUSpaRse in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BUSpaRse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUSpaRse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BUSpaRse |
| Version: 1.25.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse |
| StartedAt: 2026-03-08 15:27:00 -0400 (Sun, 08 Mar 2026) |
| EndedAt: 2026-03-08 15:31:12 -0400 (Sun, 08 Mar 2026) |
| EllapsedTime: 251.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse
###
##############################################################################
##############################################################################
* checking for file ‘BUSpaRse/DESCRIPTION’ ... OK
* preparing ‘BUSpaRse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘sparse-matrix.Rmd’ using rmarkdown
Warning: call dbDisconnect() when finished working with a connection
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
2026-03-08 15:27:46.868 R[69643:117014564] XType: Using static font registry.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpGauKc0/Rbuild104cf4c1c3ab7/BUSpaRse/vignettes/sparse-matrix_files/figure-html/unnamed-chunk-9-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpGauKc0/Rbuild104cf4c1c3ab7/BUSpaRse/vignettes/sparse-matrix_files/figure-html/unnamed-chunk-14-1.png" but not available.
--- finished re-building ‘sparse-matrix.Rmd’
--- re-building ‘tr2g.Rmd’ using rmarkdown
Quitting from tr2g.Rmd:64-69 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_500>
Error in `req_perform()`:
! HTTP 500 Internal Server Error.
---
Backtrace:
▆
1. └─BUSpaRse::tr2g_ensembl(...)
2. └─BUSpaRse:::my_useMart(ensembl_version, mart_use, ds_name, host_use)
3. └─biomaRt::useMart(biomart = mart_use, dataset = ds_name, host = host_use)
4. └─biomaRt:::.useMart(...)
5. └─biomaRt:::.listMarts(...)
6. └─biomaRt:::bmRequest(...)
7. └─httr2::req_perform(request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tr2g.Rmd' failed with diagnostics:
HTTP 500 Internal Server Error.
--- failed re-building ‘tr2g.Rmd’
SUMMARY: processing the following file failed:
‘tr2g.Rmd’
Error: Vignette re-building failed.
Execution halted