| Back to Build/check report for BioC 3.24: simplified long |
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This page was generated on 2026-04-30 11:32 -0400 (Thu, 30 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4843 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 79/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AnnotationHub 4.3.0 (landing page) Bioconductor Package Maintainer
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for AnnotationHub in R Universe. | ||||||||||||||
|
To the developers/maintainers of the AnnotationHub package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationHub.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AnnotationHub |
| Version: 4.3.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AnnotationHub |
| StartedAt: 2026-04-29 16:18:22 -0400 (Wed, 29 Apr 2026) |
| EndedAt: 2026-04-29 16:19:10 -0400 (Wed, 29 Apr 2026) |
| EllapsedTime: 48.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AnnotationHub
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* checking for file ‘AnnotationHub/DESCRIPTION’ ... OK
* preparing ‘AnnotationHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘AnnotationHub-HOWTO.Rmd’ using rmarkdown
Quitting from AnnotationHub-HOWTO.Rmd:40-45 [less-model-org]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Hub_get1()`:
! no records found for the given index
---
Backtrace:
▆
1. ├─query(ah, c("OrgDb", "maintainer@bioconductor.org"))[[1]]
2. └─query(ah, c("OrgDb", "maintainer@bioconductor.org"))[[1]]
3. └─AnnotationHub (local) .local(x, i, j = j, ...)
4. └─AnnotationHub:::.Hub_get1(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'AnnotationHub-HOWTO.Rmd' failed with diagnostics:
no records found for the given index
--- failed re-building ‘AnnotationHub-HOWTO.Rmd’
--- re-building ‘AnnotationHub.Rmd’ using rmarkdown
--- finished re-building ‘AnnotationHub.Rmd’
--- re-building ‘TroubleshootingTheHubs.Rmd’ using rmarkdown
--- finished re-building ‘TroubleshootingTheHubs.Rmd’
SUMMARY: processing the following file failed:
‘AnnotationHub-HOWTO.Rmd’
Error: Vignette re-building failed.
Execution halted