Back to Build/check report for BioC 3.24:   simplified   long
ABCDEFGHIJKLMNOPQRSTU[V]WXYZ

This page was generated on 2026-04-22 11:58 -0400 (Wed, 22 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4796
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2292/2351HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
variancePartition 1.41.5  (landing page)
Gabriel E. Hoffman
Snapshot Date: 2026-04-21 14:59 -0400 (Tue, 21 Apr 2026)
git_url: https://git.bioconductor.org/packages/variancePartition
git_branch: devel
git_last_commit: 16e114f
git_last_commit_date: 2026-03-19 09:20:03 -0400 (Thu, 19 Mar 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
See other builds for variancePartition in R Universe.

BUILD results for variancePartition on nebbiolo2

To the developers/maintainers of the variancePartition package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: variancePartition
Version: 1.41.5
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 variancePartition
StartedAt: 2026-04-21 21:29:13 -0400 (Tue, 21 Apr 2026)
EndedAt: 2026-04-21 21:39:45 -0400 (Tue, 21 Apr 2026)
EllapsedTime: 631.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 variancePartition
###
##############################################################################
##############################################################################


* checking for file ‘variancePartition/DESCRIPTION’ ... OK
* preparing ‘variancePartition’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to process help pages)
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘FAQ.Rmd’ using rmarkdown
--- finished re-building ‘FAQ.Rmd’

--- re-building ‘additional_visualization.Rmd’ using rmarkdown
--- finished re-building ‘additional_visualization.Rmd’

--- re-building ‘dream.Rmd’ using rmarkdown
--- finished re-building ‘dream.Rmd’

--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’

--- re-building ‘mvtests.Rmd’ using rmarkdown
--- finished re-building ‘mvtests.Rmd’

--- re-building ‘rnd_effects.Rmd’ using rmarkdown
--- finished re-building ‘rnd_effects.Rmd’

--- re-building ‘variancePartition.Rmd’ using rmarkdown

Quitting from variancePartition.Rmd:617-659 [ballgown]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ballgown'
---
Backtrace:
    ▆
 1. └─base::library("ballgown")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'variancePartition.Rmd' failed with diagnostics:
there is no package called 'ballgown'
--- failed re-building ‘variancePartition.Rmd’

SUMMARY: processing the following file failed:
  ‘variancePartition.Rmd’

Error: Vignette re-building failed.
Execution halted