| Back to Build/check report for BioC 3.24: simplified long |
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This page was generated on 2026-04-22 11:57 -0400 (Wed, 22 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4796 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 800/2351 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gDRcore 1.9.7 (landing page) Arkadiusz Gladki
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| See other builds for gDRcore in R Universe. | ||||||||||||||
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To the developers/maintainers of the gDRcore package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRcore.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gDRcore |
| Version: 1.9.7 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL gDRcore |
| StartedAt: 2026-04-21 16:28:29 -0400 (Tue, 21 Apr 2026) |
| EndedAt: 2026-04-21 16:28:31 -0400 (Tue, 21 Apr 2026) |
| EllapsedTime: 1.7 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL gDRcore
###
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* installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’
* installing *source* package ‘gDRcore’ ...
** this is package ‘gDRcore’ version ‘1.9.7’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c gDRcore.cpp -o gDRcore.o
gDRcore.cpp: In function ‘SEXPREC* sortcpp(SEXP)’:
gDRcore.cpp:43:15: error: ‘STRING_PTR’ was not declared in this scope; did you mean ‘STRING_PTR_RO’?
43 | std::sort(STRING_PTR(x), STRING_PTR(x) + LENGTH(x), cmp_char);
| ^~~~~~~~~~
| STRING_PTR_RO
gDRcore.cpp: In function ‘void internalOrder(int*, SEXP)’:
gDRcore.cpp:116:20: error: ‘STRING_PTR’ was not declared in this scope; did you mean ‘STRING_PTR_RO’?
116 | SEXP* start = &STRING_PTR(x)[0];
| ^~~~~~~~~~
| STRING_PTR_RO
gDRcore.cpp: In function ‘SEXPREC* matches(SEXP, SEXP)’:
gDRcore.cpp:283:21: error: ‘STRING_PTR’ was not declared in this scope; did you mean ‘STRING_PTR_RO’?
283 | SEXP* astart = &STRING_PTR(a)[0];
| ^~~~~~~~~~
| STRING_PTR_RO
make: *** [/home/biocbuild/bbs-3.24-bioc/R/etc/Makeconf:197: gDRcore.o] Error 1
ERROR: compilation failed for package ‘gDRcore’
* removing ‘/home/biocbuild/bbs-3.24-bioc/R/site-library/gDRcore’