| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-12 11:33 -0400 (Tue, 12 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4892 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 682/2374 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epigraHMM 1.21.1 (landing page) Pedro Baldoni
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for epigraHMM in R Universe. | ||||||||||||||
|
To the developers/maintainers of the epigraHMM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epigraHMM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: epigraHMM |
| Version: 1.21.1 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 epigraHMM |
| StartedAt: 2026-05-11 17:32:18 -0400 (Mon, 11 May 2026) |
| EndedAt: 2026-05-11 17:41:20 -0400 (Mon, 11 May 2026) |
| EllapsedTime: 541.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 epigraHMM
###
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* checking for file ‘epigraHMM/DESCRIPTION’ ... OK
* preparing ‘epigraHMM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘epigraHMM.Rmd’ using rmarkdown
Quitting from epigraHMM.Rmd:391-400 [viz_heatmap1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! subscript contains out-of-bounds indices
---
Backtrace:
▆
1. ├─pattern_peak[5]
2. └─pattern_peak[5]
3. └─S4Vectors:::subset_along_ROWS(x, i, drop = drop)
4. ├─S4Vectors::extractROWS(x, i)
5. └─S4Vectors::extractROWS(x, i)
6. └─S4Vectors::normalizeSingleBracketSubscript(i, x, as.NSBS = TRUE)
7. ├─S4Vectors::NSBS(...)
8. └─S4Vectors::NSBS(...)
9. └─S4Vectors:::.subscript_error("subscript contains out-of-bounds indices")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'epigraHMM.Rmd' failed with diagnostics:
subscript contains out-of-bounds indices
--- failed re-building ‘epigraHMM.Rmd’
SUMMARY: processing the following file failed:
‘epigraHMM.Rmd’
Error: Vignette re-building failed.
Execution halted