| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-04-22 11:57 -0400 (Wed, 22 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4796 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 553/2351 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| densvis 1.21.1 (landing page) Alan O'Callaghan
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for densvis in R Universe. | ||||||||||||||
|
To the developers/maintainers of the densvis package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/densvis.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: densvis |
| Version: 1.21.1 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 densvis |
| StartedAt: 2026-04-21 18:01:02 -0400 (Tue, 21 Apr 2026) |
| EndedAt: 2026-04-21 18:01:53 -0400 (Tue, 21 Apr 2026) |
| EllapsedTime: 51.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 densvis
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* checking for file ‘densvis/DESCRIPTION’ ... OK
* preparing ‘densvis’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘densvis.Rmd’ using rmarkdown
Quitting from densvis.Rmd:122-130 [run-densmap]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `lock()`:
! Cannot open lock file: No such file or directory
---
Backtrace:
▆
1. └─densvis::densmap(data[, 1:2], dens_frac = 0.5, dens_lambda = 0.5)
2. └─densvis::umap(..., densmap = TRUE)
3. └─basilisk::basiliskStart(python_env)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::lockExternalDir(exdir, exclusive = FALSE)
6. └─dir.expiry::lockDirectory(path, ...)
7. └─filelock::lock(plock, exclusive = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'densvis.Rmd' failed with diagnostics:
Cannot open lock file: No such file or directory
--- failed re-building ‘densvis.Rmd’
SUMMARY: processing the following file failed:
‘densvis.Rmd’
Error: Vignette re-building failed.
Execution halted