| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-04-22 11:57 -0400 (Wed, 22 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4796 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 738/2351 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| FLAMES 2.5.5 (landing page) Changqing Wang
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for FLAMES in R Universe. | ||||||||||||||
|
To the developers/maintainers of the FLAMES package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FLAMES.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: FLAMES |
| Version: 2.5.5 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 FLAMES |
| StartedAt: 2026-04-21 18:23:23 -0400 (Tue, 21 Apr 2026) |
| EndedAt: 2026-04-21 18:25:29 -0400 (Tue, 21 Apr 2026) |
| EllapsedTime: 126.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 FLAMES
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* checking for file ‘FLAMES/DESCRIPTION’ ... OK
* preparing ‘FLAMES’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘FLAMES_vignette.Rmd’ using rmarkdown
Quitting from FLAMES_vignette.Rmd:168-173 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `lock()`:
! Cannot open lock file: No such file or directory
---
Backtrace:
▆
1. ├─FLAMES::run_step(mspipeline, "barcode_demultiplex")
2. └─FLAMES::run_step(mspipeline, "barcode_demultiplex")
3. ├─FLAMES:::barcode_demultiplex(pipeline)
4. └─FLAMES:::barcode_demultiplex(pipeline)
5. └─base::lapply(...)
6. └─FLAMES (local) FUN(X[[i]], ...)
7. └─FLAMES::find_barcode(...)
8. └─FLAMES::cutadapt(...)
9. └─basilisk::basiliskRun(...)
10. └─basilisk::basiliskStart(...)
11. └─basilisk::obtainEnvironmentPath(env)
12. └─basilisk::lockExternalDir(exdir, exclusive = FALSE)
13. └─dir.expiry::lockDirectory(path, ...)
14. └─filelock::lock(plock, exclusive = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'FLAMES_vignette.Rmd' failed with diagnostics:
Cannot open lock file: No such file or directory
--- failed re-building ‘FLAMES_vignette.Rmd’
SUMMARY: processing the following file failed:
‘FLAMES_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted