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This page was generated on 2026-04-22 11:57 -0400 (Wed, 22 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4796
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 509/2351HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DaMiRseq 2.23.1  (landing page)
Mattia Chiesa
Snapshot Date: 2026-04-21 14:59 -0400 (Tue, 21 Apr 2026)
git_url: https://git.bioconductor.org/packages/DaMiRseq
git_branch: devel
git_last_commit: 9ba86fc
git_last_commit_date: 2026-04-21 09:38:04 -0400 (Tue, 21 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
See other builds for DaMiRseq in R Universe.

BUILD results for DaMiRseq on nebbiolo2

To the developers/maintainers of the DaMiRseq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DaMiRseq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DaMiRseq
Version: 2.23.1
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 DaMiRseq
StartedAt: 2026-04-21 17:54:09 -0400 (Tue, 21 Apr 2026)
EndedAt: 2026-04-21 17:58:44 -0400 (Tue, 21 Apr 2026)
EllapsedTime: 275.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 DaMiRseq
###
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* checking for file ‘DaMiRseq/DESCRIPTION’ ... OK
* preparing ‘DaMiRseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘DaMiRseq.Rnw’ using knitr

Quitting from DaMiRseq.Rnw:742-751 [chu_17ter3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! object 'idx_best_model' not found
---
Backtrace:
    x
 1. \-DaMiRseq::DaMiR.EnsL_Predict(t(adj_norm_ind_ts), bestModel = cv_models[[idx_best_model]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DaMiRseq.Rnw' failed with diagnostics:
object 'idx_best_model' not found
--- failed re-building ‘DaMiRseq.Rnw’

SUMMARY: processing the following file failed:
  ‘DaMiRseq.Rnw’

Error: Vignette re-building failed.
Execution halted