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This page was generated on 2025-11-04 15:01 -0500 (Tue, 04 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4809
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 84/431HostnameOS / ArchINSTALLBUILDCHECK
curatedPCaData 1.7.0  (landing page)
Teemu Daniel Laajala
Snapshot Date: 2025-11-04 07:00 -0500 (Tue, 04 Nov 2025)
git_url: https://git.bioconductor.org/packages/curatedPCaData
git_branch: devel
git_last_commit: 29ec7b9
git_last_commit_date: 2025-10-29 10:06:05 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for curatedPCaData on nebbiolo1

To the developers/maintainers of the curatedPCaData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: curatedPCaData
Version: 1.7.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedPCaData
StartedAt: 2025-11-04 11:14:22 -0500 (Tue, 04 Nov 2025)
EndedAt: 2025-11-04 11:16:17 -0500 (Tue, 04 Nov 2025)
EllapsedTime: 114.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedPCaData
###
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* checking for file ‘curatedPCaData/DESCRIPTION’ ... OK
* preparing ‘curatedPCaData’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘overview.Rmd’ using rmarkdown

Quitting from overview.Rmd:72-83 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.checkFixSampleMap()`:
! 'sampleMap' does not have required columns
---
Backtrace:
    ▆
 1. ├─BiocGenerics::lapply(...)
 2. └─base::lapply(...)
 3.   └─global FUN(X[[i]], ...)
 4.     └─curatedPCaData::getPCa(id)
 5.       └─MultiAssayExperiment::MultiAssayExperiment(...)
 6.         └─MultiAssayExperiment:::.checkFixSampleMap(sampleMap)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'overview.Rmd' failed with diagnostics:
'sampleMap' does not have required columns
--- failed re-building ‘overview.Rmd’

SUMMARY: processing the following file failed:
  ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted