Build/check report for BioC 3.23 experimental data - BUILD results for CytoMethIC on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4809
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BUILD results for CytoMethIC on nebbiolo1

To the developers/maintainers of the CytoMethIC package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CytoMethIC

Version: 1.7.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoMethIC

StartedAt: 2025-11-04 11:15:21 -0500 (Tue, 04 Nov 2025)

EndedAt: 2025-11-04 11:16:33 -0500 (Tue, 04 Nov 2025)

EllapsedTime: 71.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoMethIC
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* checking for file ‘CytoMethIC/DESCRIPTION’ ... OK
* preparing ‘CytoMethIC’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘CytoMethIC.Rmd’ using rmarkdown
--- finished re-building ‘CytoMethIC.Rmd’

--- re-building ‘Oncology.Rmd’ using rmarkdown

Quitting from Oncology.Rmd:48-61 [cyto4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH8395
  title: Random Forest Model for Pan-Cancer Tumor Classification
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
---
Backtrace:
     ▆
  1. ├─ExperimentHub()[["EH8395"]]
  2. └─ExperimentHub()[["EH8395"]]
  3.   └─ExperimentHub (local) .local(x, i, j = j, ...)
  4.     ├─methods::callNextMethod(...)
  5.     │ └─base::eval(call, callEnv)
  6.     │   └─base::eval(call, callEnv)
  7.     └─AnnotationHub (local) .nextMethod(...)
  8.       └─AnnotationHub (local) .local(x, i, j = j, ...)
  9.         └─AnnotationHub:::.Hub_get1(...)
 10.           └─base::tryCatch(...)
 11.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13.                 └─value[[3L]](cond)
 14.                   └─base::tryCatch(...)
 15.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 16.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 17.                         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Oncology.Rmd' failed with diagnostics:
failed to load resource
  name: EH8395
  title: Random Forest Model for Pan-Cancer Tumor Classification
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building ‘Oncology.Rmd’

SUMMARY: processing the following file failed:
  ‘Oncology.Rmd’

Error: Vignette re-building failed.
Execution halted