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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:MPO.db.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings MPO.db_0.99.8.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-data-annotation/meat/MPO.db.Rcheck’
* using R version 4.6.0 alpha (2026-04-05 r89794)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-15 10:05:44 UTC
* checking for file ‘MPO.db/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MPO.db’ version ‘0.99.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MPO.db’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
MPO.db version 0.99.8

It looks like this package has a loading problem: see the messages for
details.
* checking whether the package can be loaded with stated dependencies ... WARNING
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
MPO.db version 0.99.8

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... WARNING
---- unloading
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
Loading required namespace: MPO.db
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
* checking loading without being on the library search path ... WARNING
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
MPO.db version 0.99.8

It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... WARNING
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
* checking Rd \usage sections ... NOTE
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
MPODb-class 2.165  0.369  22.689
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 5 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.23-data-annotation/meat/MPO.db.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL MPO.db
###
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘MPO.db’ ...
** this is package ‘MPO.db’ version ‘0.99.8’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
** testing if installed package can be loaded from final location
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
Error while performing HEAD request.
   Proceeding without cache information.
** testing if installed package keeps a record of temporary installation path
* DONE (MPO.db)

R version 4.6.0 alpha (2026-04-05 r89794)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MPO.db)
MPO.db version 0.99.8
> test_check("MPO.db")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
> 
> proc.time()
   user  system elapsed 
 10.314   1.354  12.095