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This page was generated on 2026-01-21 11:35 -0500 (Wed, 21 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4805 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4539 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2034/2343 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| smoothclust 1.7.0 (landing page) Lukas M. Weber
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the smoothclust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/smoothclust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: smoothclust |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data smoothclust |
| StartedAt: 2026-01-20 17:39:03 -0500 (Tue, 20 Jan 2026) |
| EndedAt: 2026-01-20 17:39:24 -0500 (Tue, 20 Jan 2026) |
| EllapsedTime: 21.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data smoothclust
###
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* checking for file ‘smoothclust/DESCRIPTION’ ... OK
* preparing ‘smoothclust’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘smoothclust.Rmd’ using rmarkdown
Quitting from smoothclust.Rmd:73-76 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unknown type for 'data'
---
Backtrace:
▆
1. └─smoothclust::smoothclust(spe)
2. └─BiocNeighbors::findNeighbors(...)
3. ├─BiocNeighbors::buildIndex(X, ..., BNPARAM = BNPARAM)
4. └─BiocNeighbors::buildIndex(X, ..., BNPARAM = BNPARAM)
5. ├─methods::callGeneric(X, transposed = transposed, ..., BNPARAM = KmknnParam())
6. │ └─base::eval(call, parent.frame())
7. │ └─base::eval(call, parent.frame())
8. ├─BiocNeighbors::buildIndex(X, transposed = transposed, ..., BNPARAM = KmknnParam())
9. └─BiocNeighbors::buildIndex(X, transposed = transposed, ..., BNPARAM = KmknnParam())
10. ├─methods::callGeneric(X, transposed = transposed, ..., BNPARAM = defineBuilder(BNPARAM))
11. │ └─base::eval(call, parent.frame())
12. │ └─base::eval(call, parent.frame())
13. ├─BiocNeighbors::buildIndex(X, transposed = transposed, ..., BNPARAM = defineBuilder(BNPARAM))
14. └─BiocNeighbors::buildIndex(X, transposed = transposed, ..., BNPARAM = defineBuilder(BNPARAM))
15. ├─BNPARAM$class(ptr = generic_build(BNPARAM$builder, X), names = cn)
16. │ └─methods::new("KmknnIndex", ptr = ptr, names = names)
17. │ ├─methods::initialize(value, ...)
18. │ └─methods::initialize(value, ...)
19. └─BiocNeighbors:::generic_build(BNPARAM$builder, X)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'smoothclust.Rmd' failed with diagnostics:
unknown type for 'data'
--- failed re-building ‘smoothclust.Rmd’
SUMMARY: processing the following file failed:
‘smoothclust.Rmd’
Error: Vignette re-building failed.
Execution halted