| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-29 10:15 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4694 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1308/2415 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| methylscaper 1.20.0 (landing page) Bacher Rhonda
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for methylscaper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the methylscaper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylscaper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methylscaper |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylscaper |
| StartedAt: 2026-04-28 19:12:23 -0400 (Tue, 28 Apr 2026) |
| EndedAt: 2026-04-28 19:13:02 -0400 (Tue, 28 Apr 2026) |
| EllapsedTime: 39.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylscaper
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* checking for file ‘methylscaper/DESCRIPTION’ ... OK
* preparing ‘methylscaper’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘methylScaper.Rmd’ using rmarkdown
Quitting from methylScaper.Rmd:96-117 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://rbacher.rc.ufl.edu/methylscaper/data/GSE109262_SUBSET/GSM2936192_ESC_A03_CpG-met_processed.tsv.gz'
---
Backtrace:
▆
1. └─methylscaper::subsetSC(...)
2. └─data.table::fread(cgfiles[i], header = FALSE, stringsAsFactors = FALSE)
3. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'methylScaper.Rmd' failed with diagnostics:
cannot open URL 'https://rbacher.rc.ufl.edu/methylscaper/data/GSE109262_SUBSET/GSM2936192_ESC_A03_CpG-met_processed.tsv.gz'
--- failed re-building ‘methylScaper.Rmd’
SUMMARY: processing the following file failed:
‘methylScaper.Rmd’
Error: Vignette re-building failed.
Execution halted