| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-17 11:32 -0500 (Tue, 17 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4865 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1215/2352 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mCSEA 1.31.3 (landing page) Jordi Martorell-Marugán
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for mCSEA in R Universe. | ||||||||||||||
|
To the developers/maintainers of the mCSEA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mCSEA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mCSEA |
| Version: 1.31.3 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mCSEA |
| StartedAt: 2026-02-16 18:38:43 -0500 (Mon, 16 Feb 2026) |
| EndedAt: 2026-02-16 18:41:32 -0500 (Mon, 16 Feb 2026) |
| EllapsedTime: 169.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mCSEA
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* checking for file ‘mCSEA/DESCRIPTION’ ... OK
* preparing ‘mCSEA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘mCSEA.Rmd’ using rmarkdown
Quitting from mCSEA.Rmd:283-287 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.getAttributes()`:
! biomaRt error: looks like we're connecting to incompatible version of BioMart.
---
Backtrace:
x
1. \-mCSEA::mCSEAPlot(...)
2. \-biomaRt::useMart(...)
3. \-biomaRt:::.useMart(...)
4. \-biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)
5. \-biomaRt:::.getAttributes(mart, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mCSEA.Rmd' failed with diagnostics:
biomaRt error: looks like we're connecting to incompatible version of BioMart.
--- failed re-building ‘mCSEA.Rmd’
SUMMARY: processing the following file failed:
‘mCSEA.Rmd’
Error: Vignette re-building failed.
Execution halted