| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-27 11:32 -0400 (Fri, 27 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4880 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4577 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 689/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epiNEM 1.35.0 (landing page) Martin Pirkl
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for epiNEM in R Universe. | ||||||||||||||
|
To the developers/maintainers of the epiNEM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiNEM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: epiNEM |
| Version: 1.35.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epiNEM |
| StartedAt: 2026-03-26 18:28:47 -0400 (Thu, 26 Mar 2026) |
| EndedAt: 2026-03-26 18:29:43 -0400 (Thu, 26 Mar 2026) |
| EllapsedTime: 56.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epiNEM
###
##############################################################################
##############################################################################
* checking for file ‘epiNEM/DESCRIPTION’ ... OK
* preparing ‘epiNEM’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘epiNEM.Rmd’ using rmarkdown
Quitting from epiNEM.Rmd:265-349 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://string-db.org/api/tsv-no-header/version'
---
Backtrace:
▆
1. └─STRINGdb$new(...)
2. └─methods::new(def, ...)
3. ├─methods::initialize(value, ...)
4. └─methods::initialize(value, ...)
5. └─.Object$initialize(...)
6. └─utils::read.table(...)
7. ├─base::open(file, "rt")
8. └─base::open.connection(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'epiNEM.Rmd' failed with diagnostics:
cannot open the connection to 'https://string-db.org/api/tsv-no-header/version'
--- failed re-building ‘epiNEM.Rmd’
SUMMARY: processing the following file failed:
‘epiNEM.Rmd’
Error: Vignette re-building failed.
Execution halted