Denes Turei
| Snapshot Date: 2026-05-06 13:40 -0400 (Wed, 06 May 2026) |
| git_url: https://git.bioconductor.org/packages/OmnipathR |
| git_branch: RELEASE_3_23 |
| git_last_commit: a4e9224 |
| git_last_commit_date: 2026-04-29 06:27:44 -0400 (Wed, 29 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-07 11:36 -0400 (Thu, 07 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4990 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4723 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1541/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 4.0.0 (landing page) Denes Turei
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | OK | ERROR | ERROR | |||||||||
| See other builds for OmnipathR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the OmnipathR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OmnipathR |
| Version: 4.0.0 |
| Command: rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_4.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir |
| StartedAt: 2026-05-06 23:46:17 -0400 (Wed, 06 May 2026) |
| EndedAt: 2026-05-06 23:46:27 -0400 (Wed, 06 May 2026) |
| EllapsedTime: 10.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OmnipathR_4.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OmnipathR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OmnipathR.buildbin-libdir OmnipathR_4.0.0.tar.gz' >>>>>>> * installing *source* package ‘OmnipathR’ ... ** this is package ‘OmnipathR’ version ‘4.0.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2026-05-06 23:46:26] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2026-05-06 23:46:26] [TRACE] [OmnipathR] JSON validation successful: TRUE [2026-05-06 23:46:26] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2026-05-06 23:46:26] [INFO] [OmnipathR] Package `OmnipathR` packaged: 2026-05-06 22:00:24 UTC; biocbuild [2026-05-06 23:46:26] [INFO] [OmnipathR] Package `OmnipathR` date/publication: 2026-05-06 [2026-05-06 23:46:26] [INFO] [OmnipathR] Package `OmnipathR` built: R 4.6.0; ; 2026-05-07 03:46:18 UTC; unix [2026-05-06 23:46:26] [INFO] [OmnipathR] Package `OmnipathR` version: 4.0.0 [2026-05-06 23:46:26] [INFO] [OmnipathR] Package `OmnipathR` repository: Bioconductor 3.23 Error: package or namespace load failed for ‘OmnipathR’: .onLoad failed in loadNamespace() for 'OmnipathR', details: call: strsplit(info, "\n", useBytes = TRUE)[[1]] error: subscript out of bounds Error: loading failed Execution halted ERROR: loading failed * removing ‘/Users/biocbuild/bbs-3.23-bioc/meat/OmnipathR.buildbin-libdir/OmnipathR’