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This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4957
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4686
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4627
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 994/2404HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCBricks 1.29.0  (landing page)
Koustav Pal
Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026)
git_url: https://git.bioconductor.org/packages/HiCBricks
git_branch: devel
git_last_commit: cac0a08
git_last_commit_date: 2025-10-29 10:48:17 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  
See other builds for HiCBricks in R Universe.


CHECK results for HiCBricks on kunpeng2

To the developers/maintainers of the HiCBricks package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: HiCBricks
Version: 1.29.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HiCBricks_1.29.0.tar.gz
StartedAt: 2026-04-17 04:14:47 -0000 (Fri, 17 Apr 2026)
EndedAt: 2026-04-17 04:18:06 -0000 (Fri, 17 Apr 2026)
EllapsedTime: 199.1 seconds
RetCode: 0
Status:   OK  
CheckDir: HiCBricks.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HiCBricks_1.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HiCBricks.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCBricks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HiCBricks’ version ‘1.29.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCBricks’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HiCBricks.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL HiCBricks
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘HiCBricks’ ...
** this is package ‘HiCBricks’ version ‘1.29.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiCBricks)

Tests output


Example timings

HiCBricks.Rcheck/HiCBricks-Ex.timings

nameusersystemelapsed
BrickContainer_change_experiment_name1.6120.0621.678
BrickContainer_change_output_directory1.1930.0201.220
BrickContainer_get_path_to_file1.1340.0441.181
BrickContainer_list_chromosomes1.1500.0671.221
BrickContainer_list_experiment_name1.1270.0561.186
BrickContainer_list_files1.1820.0241.209
BrickContainer_list_output_directory1.1060.0401.151
BrickContainer_list_resolutions1.1010.0441.148
BrickContainer_unlink_resolution2.3680.0922.466
Brick_add_ranges2.4750.0832.566
Brick_call_compartments2.1730.1162.298
Brick_export_to_sparse3.3830.0963.487
Brick_fetch_range_index1.3610.0231.389
Brick_fetch_row_vector2.2970.0802.383
Brick_get_bintable1.1860.0681.257
Brick_get_chrominfo1.1010.0121.116
Brick_get_entire_matrix1.5400.0361.583
Brick_get_matrix1.4990.0361.538
Brick_get_matrix_mcols1.4230.0481.475
Brick_get_matrix_within_coords2.0820.0832.175
Brick_get_ranges1.1470.0041.155
Brick_get_values_by_distance1.5850.0401.629
Brick_get_vector_values1.4830.0521.541
Brick_list_matrices1.1170.0081.127
Brick_list_matrix_mcols1.0950.0121.110
Brick_list_mcool_normalisations000
Brick_list_mcool_resolutions0.0000.0000.001
Brick_list_rangekeys1.0740.0281.105
Brick_list_ranges_mcols1.1070.0081.119
Brick_load_cis_matrix_till_distance1.3690.0521.428
Brick_load_data_from_mcool000
Brick_load_data_from_sparse000
Brick_load_matrix1.4300.0281.463
Brick_local_score_differentiator2.2410.0682.318
Brick_make_ranges0.0120.0000.012
Brick_matrix_dimensions1.4560.0401.500
Brick_matrix_exists1.4250.0241.453
Brick_matrix_filename1.4200.0441.468
Brick_matrix_isdone1.4290.0151.449
Brick_matrix_issparse1.4250.0281.457
Brick_matrix_maxdist1.4950.0521.551
Brick_matrix_minmax1.4270.0361.471
Brick_mcool_normalisation_exists000
Brick_rangekey_exists1.0880.0321.122
Brick_return_region_position1.2250.0241.252
Brick_vizart_plot_heatmap2.9160.0642.988
Create_many_Bricks1.0960.0201.119
Create_many_Bricks_from_mcool000
load_BrickContainer1.1840.0161.203