Manuela Hummel
| Snapshot Date: 2026-03-20 13:40 -0400 (Fri, 20 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/GlobalAncova |
| git_branch: devel |
| git_last_commit: 342275c |
| git_last_commit_date: 2025-10-29 09:57:03 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4866 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 902/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GlobalAncova 4.29.0 (landing page) Manuela Hummel
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | WARNINGS | ERROR | |||||||||
| See other builds for GlobalAncova in R Universe. | ||||||||||||||
|
To the developers/maintainers of the GlobalAncova package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GlobalAncova.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GlobalAncova |
| Version: 4.29.0 |
| Command: rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GlobalAncova_4.29.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GlobalAncova.buildbin-libdir |
| StartedAt: 2026-03-21 02:29:43 -0400 (Sat, 21 Mar 2026) |
| EndedAt: 2026-03-21 02:29:56 -0400 (Sat, 21 Mar 2026) |
| EllapsedTime: 13.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GlobalAncova_4.29.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GlobalAncova.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GlobalAncova.buildbin-libdir GlobalAncova_4.29.0.tar.gz'
>>>>>>>
* installing *source* package ‘GlobalAncova’ ...
** this is package ‘GlobalAncova’ version ‘4.29.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c:34:7: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
33 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~~
| %lu
34 | (*sD)*(*sD)*sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:39:7: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
38 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~~
| %lu
39 | (*sD)*(*sD)*sizeof(double) );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:44:7: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
43 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~~
| %lu
44 | (*zD)*(*sD)*sizeof(double) );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:49:7: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
48 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
| ~~
| %lu
49 | (*zD)*(*zD)*sizeof(double) );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:89:7: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
88 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
| ~~
| %lu
89 | (*zxx)*(*zD_full) * sizeof(double) );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:101:9: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
100 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
| ~~
| %lu
101 | (*zxx)*(*zD_red) * sizeof(double) );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:149:6: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
148 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
149 | (*zrr) * sizeof(double) );
| ^~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:154:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
153 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
154 | (*zrr) * sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:159:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
158 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
159 | (*n_test_genes) * sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:164:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
163 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
164 | (*sD_full)*(*sD_full) * sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:171:7: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
170 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
171 | (*N_Subjects) * sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:251:6: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
250 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
251 | (*zrr) * sizeof(double) );
| ^~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:256:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
255 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
256 | (*zrr) * sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:261:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
260 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
261 | (*n_test_genes) * sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:266:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
265 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
266 | (*sD_full)*(*sD_full) * sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:273:7: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
272 | { error("Warning in permut: Memory block of %d bytes unavailable",
| ~~
| %lu
273 | (*N_Subjects) * sizeof(int));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
16 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ludcmp.c -o ludcmp.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c matrix.c -o matrix.o
clang -arch arm64 -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Users/biocbuild/bbs-3.23-bioc/meat/GlobalAncova.buildbin-libdir/00LOCK-GlobalAncova/00new/GlobalAncova/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GlobalAncova)
>>>>>>>
>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR GlobalAncova.buildbin-libdir/GlobalAncova/libs/GlobalAncova.so
>>>>>>>
>>>>>>> Paths before fix:
GlobalAncova.buildbin-libdir/GlobalAncova/libs/GlobalAncova.so:
GlobalAncova.so (compatibility version 0.0.0, current version 0.0.0)
/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)
>>>>>>> Fix with install_name_tool:
ERROR: R installation problem: File /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/lib/libR.dylib not found!