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This page was generated on 2026-05-25 11:32 -0400 (Mon, 25 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4995
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Package 693/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EpiMix 1.14.0  (landing page)
Yuanning Zheng
Snapshot Date: 2026-05-24 13:40 -0400 (Sun, 24 May 2026)
git_url: https://git.bioconductor.org/packages/EpiMix
git_branch: RELEASE_3_23
git_last_commit: 5ca43ef
git_last_commit_date: 2026-04-28 08:58:39 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
See other builds for EpiMix in R Universe.

BUILD results for EpiMix on nebbiolo1

To the developers/maintainers of the EpiMix package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EpiMix.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EpiMix
Version: 1.14.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EpiMix
StartedAt: 2026-05-24 17:44:48 -0400 (Sun, 24 May 2026)
EndedAt: 2026-05-24 17:47:55 -0400 (Sun, 24 May 2026)
EllapsedTime: 186.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EpiMix
###
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* checking for file ‘EpiMix/DESCRIPTION’ ... OK
* preparing ‘EpiMix’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Methylation_Modeling.Rmd’ using rmarkdown
trying URL 'https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E096_18_core_K27ac_hg38lift_mnemonics.bed.gz'

Quitting from Methylation_Modeling.Rmd:158-185 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E096_18_core_K27ac_hg38lift_mnemonics.bed.gz'
---
Backtrace:
    ▆
 1. └─EpiMix::EpiMix(...)
 2.   └─EpiMix:::getRoadMapEnhancerProbes(...)
 3.     └─downloader::download(file.source, destfile = destfile, mode = mode)
 4.       └─utils::download.file(url, method = method, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Methylation_Modeling.Rmd' failed with diagnostics:
cannot open URL 'https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E096_18_core_K27ac_hg38lift_mnemonics.bed.gz'
--- failed re-building ‘Methylation_Modeling.Rmd’

SUMMARY: processing the following file failed:
  ‘Methylation_Modeling.Rmd’

Error: Vignette re-building failed.
Execution halted