Multiple platform build/check report for BioC 3.23 - BUILD results for EWCE on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"	4805
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"	4539
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for EWCE on kjohnson3

To the developers/maintainers of the EWCE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EWCE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: EWCE

Version: 1.19.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE

StartedAt: 2026-01-20 16:18:25 -0500 (Tue, 20 Jan 2026)

EndedAt: 2026-01-20 16:18:58 -0500 (Tue, 20 Jan 2026)

EllapsedTime: 33.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE
###
##############################################################################
##############################################################################


* checking for file ‘EWCE/DESCRIPTION’ ... OK
* preparing ‘EWCE’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘EWCE.Rmd’ using rmarkdown
2026-01-20 16:18:47.935 R[28000:784198515] XType: Using static font registry.

-- mouse

-- human

Quitting from EWCE.Rmd:115-122 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
    ▆
 1. └─EWCE::bootstrap_enrichment_test(...)
 2.   └─EWCE:::get_summed_proportions(...)
 3.     └─EWCE:::compute_gene_scores(...)
 4.       ├─gene_data[, `:=`(p, sum(hit < boot)/.N), by = c("CellType", "rank")]
 5.       └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'EWCE.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘EWCE.Rmd’

--- re-building ‘extended.Rmd’ using rmarkdown

-- mouse

-- human

Quitting from extended.Rmd:154-162 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
    ▆
 1. └─EWCE::bootstrap_enrichment_test(...)
 2.   └─EWCE:::get_summed_proportions(...)
 3.     └─EWCE:::compute_gene_scores(...)
 4.       ├─gene_data[, `:=`(p, sum(hit < boot)/.N), by = c("CellType", "rank")]
 5.       └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'extended.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘extended.Rmd’

SUMMARY: processing the following files failed:
  ‘EWCE.Rmd’ ‘extended.Rmd’

Error: Vignette re-building failed.
Execution halted