| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-02-02 11:32 -0500 (Mon, 02 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4852 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 334/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChemmineR 3.63.0 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for ChemmineR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ChemmineR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ChemmineR |
| Version: 3.63.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR |
| StartedAt: 2026-02-01 16:47:08 -0500 (Sun, 01 Feb 2026) |
| EndedAt: 2026-02-01 16:47:39 -0500 (Sun, 01 Feb 2026) |
| EllapsedTime: 31.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR
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* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* preparing ‘ChemmineR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ChemmineR.Rmd’ using rmarkdown
Quitting from ChemmineR.Rmd:537-539 [unnamed-chunk-39]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
---
Backtrace:
▆
1. └─ChemmineR::read.SDFset(...)
2. └─ChemmineR::read.SDFstr(sdfstr = sdfstr)
3. └─base::readLines(sdfstr)
4. └─base::file(con, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ChemmineR.Rmd' failed with diagnostics:
cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
--- failed re-building ‘ChemmineR.Rmd’
SUMMARY: processing the following file failed:
‘ChemmineR.Rmd’
Error: Vignette re-building failed.
Execution halted