| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-15 11:33 -0400 (Fri, 15 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4994 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 150/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BatChef 1.0.0 (landing page) Elena Zuin
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for BatChef in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BatChef package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BatChef.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BatChef |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BatChef |
| StartedAt: 2026-05-14 16:25:48 -0400 (Thu, 14 May 2026) |
| EndedAt: 2026-05-14 16:28:06 -0400 (Thu, 14 May 2026) |
| EllapsedTime: 138.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BatChef
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* checking for file ‘BatChef/DESCRIPTION’ ... OK
* preparing ‘BatChef’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘batch_correction.Rmd’ using rmarkdown
Quitting from batch_correction.Rmd:141-152 [perf]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `sort_pairs()`:
! NA are not supported.
---
Backtrace:
▆
1. ├─BiocGenerics::lapply(...)
2. └─base::lapply(...)
3. └─global FUN(X[[i]], ...)
4. └─BatChef::metrics(...)
5. └─BatChef::leiden_clustering(...)
6. └─aricode::NMI(...)
7. └─aricode::sort_pairs(c1, c2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'batch_correction.Rmd' failed with diagnostics:
NA are not supported.
--- failed re-building ‘batch_correction.Rmd’
SUMMARY: processing the following file failed:
‘batch_correction.Rmd’
Error: Vignette re-building failed.
Execution halted