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###
### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DuoClustering2018
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* checking for file ‘DuoClustering2018/DESCRIPTION’ ... OK
* preparing ‘DuoClustering2018’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘combine_data_clustering.Rmd’ using rmarkdown
--- finished re-building ‘combine_data_clustering.Rmd’

--- re-building ‘plot_performance.Rmd’ using rmarkdown

Quitting from plot_performance.Rmd:65-67 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH1500
  title: sce_full_Koh
  reason: unknown input format
---
Backtrace:
     ▆
  1. ├─eh[["EH1500"]]
  2. └─eh[["EH1500"]]
  3.   └─ExperimentHub (local) .local(x, i, j = j, ...)
  4.     ├─methods::callNextMethod(...)
  5.     │ └─base::eval(call, callEnv)
  6.     │   └─base::eval(call, callEnv)
  7.     └─AnnotationHub (local) .nextMethod(...)
  8.       └─AnnotationHub (local) .local(x, i, j = j, ...)
  9.         └─AnnotationHub:::.Hub_get1(...)
 10.           └─base::tryCatch(...)
 11.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13.                 └─value[[3L]](cond)
 14.                   └─base::tryCatch(...)
 15.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 16.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 17.                         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'plot_performance.Rmd' failed with diagnostics:
failed to load resource
  name: EH1500
  title: sce_full_Koh
  reason: unknown input format
--- failed re-building ‘plot_performance.Rmd’

--- re-building ‘run_clustering.Rmd’ using rmarkdown

Quitting from run_clustering.Rmd:61-69 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH1501
  title: sce_filteredExpr10_Koh
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. └─ExperimentHub (local) sce_filteredExpr10_Koh()
  2.   ├─eh1[[1L]]
  3.   └─eh1[[1L]]
  4.     └─ExperimentHub (local) .local(x, i, j = j, ...)
  5.       ├─methods::callNextMethod(...)
  6.       │ └─base::eval(call, callEnv)
  7.       │   └─base::eval(call, callEnv)
  8.       └─AnnotationHub (local) .nextMethod(...)
  9.         └─AnnotationHub (local) .local(x, i, j = j, ...)
 10.           └─AnnotationHub:::.Hub_get1(...)
 11.             └─base::tryCatch(...)
 12.               └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.                 └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.                   └─value[[3L]](cond)
 15.                     └─base::tryCatch(...)
 16.                       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 17.                         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 18.                           └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'run_clustering.Rmd' failed with diagnostics:
failed to load resource
  name: EH1501
  title: sce_filteredExpr10_Koh
  reason: 1 resources failed to download
--- failed re-building ‘run_clustering.Rmd’

SUMMARY: processing the following files failed:
  ‘plot_performance.Rmd’ ‘run_clustering.Rmd’

Error: Vignette re-building failed.
Execution halted