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This page was generated on 2025-11-04 15:41 -0500 (Tue, 04 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4902
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 106/435HostnameOS / ArchINSTALLBUILDCHECK
DropletTestFiles 1.20.0  (landing page)
Aaron Lun
Snapshot Date: 2025-11-04 07:30 -0500 (Tue, 04 Nov 2025)
git_url: https://git.bioconductor.org/packages/DropletTestFiles
git_branch: RELEASE_3_22
git_last_commit: 879d779
git_last_commit_date: 2025-10-29 10:02:50 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for DropletTestFiles on nebbiolo2

To the developers/maintainers of the DropletTestFiles package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DropletTestFiles
Version: 1.20.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DropletTestFiles
StartedAt: 2025-11-04 11:17:34 -0500 (Tue, 04 Nov 2025)
EndedAt: 2025-11-04 11:18:34 -0500 (Tue, 04 Nov 2025)
EllapsedTime: 60.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DropletTestFiles
###
##############################################################################
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* checking for file ‘DropletTestFiles/DESCRIPTION’ ... OK
* preparing ‘DropletTestFiles’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘motivation.Rmd’ using rmarkdown

Quitting from motivation.Rmd:56-61 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in H5Fopen(file, flags = flags, fapl = fapl, native = native): HDF5. File accessibility. Unable to open file.
---
Backtrace:
    ▆
 1. └─DropletUtils::read10xCounts(path, type = "HDF5")
 2.   ├─BiocParallel::bplapply(...)
 3.   └─BiocParallel::bplapply(...)
 4.     └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'motivation.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in H5Fopen(file, flags = flags, fapl = fapl, native = native): HDF5. File accessibility. Unable to open file.

--- failed re-building ‘motivation.Rmd’

SUMMARY: processing the following file failed:
  ‘motivation.Rmd’

Error: Vignette re-building failed.
Execution halted