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This page was generated on 2026-03-09 11:58 -0400 (Mon, 09 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4892
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2143/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
STRINGdb 2.22.0  (landing page)
Damian Szklarczyk
Snapshot Date: 2026-03-08 13:45 -0400 (Sun, 08 Mar 2026)
git_url: https://git.bioconductor.org/packages/STRINGdb
git_branch: RELEASE_3_22
git_last_commit: 94848b5
git_last_commit_date: 2025-10-29 10:16:33 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
See other builds for STRINGdb in R Universe.

BUILD results for STRINGdb on nebbiolo2

To the developers/maintainers of the STRINGdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STRINGdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: STRINGdb
Version: 2.22.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 STRINGdb
StartedAt: 2026-03-08 20:27:02 -0400 (Sun, 08 Mar 2026)
EndedAt: 2026-03-08 20:27:09 -0400 (Sun, 08 Mar 2026)
EllapsedTime: 7.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 STRINGdb
###
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* checking for file ‘STRINGdb/DESCRIPTION’ ... OK
* preparing ‘STRINGdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘STRINGdb.Rnw’ using Sweave
trying URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz'
Warning in download.file(urlStr, temp) :
  URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz': status was 'SSL peer certificate or SSH remote key was not OK'

Error: processing vignette 'STRINGdb.Rnw' failed with diagnostics:
 chunk 4 (label = map) 
Error in download.file(urlStr, temp) : 
  cannot open URL 'https://stringdb-downloads.org/download/protein.aliases.v12.0/9606.protein.aliases.v12.0.txt.gz'

--- failed re-building ‘STRINGdb.Rnw’

SUMMARY: processing the following file failed:
  ‘STRINGdb.Rnw’

Error: Vignette re-building failed.
Execution halted