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This page was generated on 2026-03-09 11:57 -0400 (Mon, 09 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4892
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1758/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RegEnrich 1.20.0  (landing page)
Weiyang Tao
Snapshot Date: 2026-03-08 13:45 -0400 (Sun, 08 Mar 2026)
git_url: https://git.bioconductor.org/packages/RegEnrich
git_branch: RELEASE_3_22
git_last_commit: 4833032
git_last_commit_date: 2025-10-29 11:00:04 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
See other builds for RegEnrich in R Universe.

BUILD results for RegEnrich on nebbiolo2

To the developers/maintainers of the RegEnrich package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RegEnrich.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RegEnrich
Version: 1.20.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RegEnrich
StartedAt: 2026-03-08 19:37:44 -0400 (Sun, 08 Mar 2026)
EndedAt: 2026-03-08 19:38:48 -0400 (Sun, 08 Mar 2026)
EllapsedTime: 64.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RegEnrich
###
##############################################################################
##############################################################################


* checking for file ‘RegEnrich/DESCRIPTION’ ... OK
* preparing ‘RegEnrich’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RegEnrich.Rmd’ using rmarkdown

Quitting from RegEnrich.Rmd:531-537 [case1ReadData1_2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─GEOquery::getGEO(GEO = "GSE31193")
  2.   └─GEOquery:::getAndParseGSEMatrices(...)
  3.     └─GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO))
  4.       ├─xml2::read_html(url)
  5.       └─xml2:::read_html.default(url)
  6.         ├─base::suppressWarnings(...)
  7.         │ └─base::withCallingHandlers(...)
  8.         ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  9.         └─xml2:::read_xml.character(...)
 10.           └─xml2:::read_xml.connection(...)
 11.             ├─base::open(x, "rb")
 12.             └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RegEnrich.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘RegEnrich.Rmd’

SUMMARY: processing the following file failed:
  ‘RegEnrich.Rmd’

Error: Vignette re-building failed.
Execution halted