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This page was generated on 2026-03-30 11:57 -0400 (Mon, 30 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4893
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 199/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocPkgTools 1.28.3  (landing page)
Sean Davis
Snapshot Date: 2026-03-29 13:45 -0400 (Sun, 29 Mar 2026)
git_url: https://git.bioconductor.org/packages/BiocPkgTools
git_branch: RELEASE_3_22
git_last_commit: c4dcc24
git_last_commit_date: 2026-02-03 12:23:00 -0400 (Tue, 03 Feb 2026)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
See other builds for BiocPkgTools in R Universe.

BUILD results for BiocPkgTools on nebbiolo2

To the developers/maintainers of the BiocPkgTools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocPkgTools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiocPkgTools
Version: 1.28.3
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 BiocPkgTools
StartedAt: 2026-03-29 16:28:03 -0400 (Sun, 29 Mar 2026)
EndedAt: 2026-03-29 16:30:17 -0400 (Sun, 29 Mar 2026)
EllapsedTime: 134.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 BiocPkgTools
###
##############################################################################
##############################################################################


* checking for file ‘BiocPkgTools/DESCRIPTION’ ... OK
* preparing ‘BiocPkgTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocPkgTools.Rmd’ using rmarkdown

Quitting from BiocPkgTools.Rmd:61-64 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `do.call()`:
! second argument must be a list
---
Backtrace:
    ▆
 1. ├─utils::head(biocBuildReport())
 2. └─BiocPkgTools::biocBuildReport()
 3.   └─BiocPkgTools::biocBuildStatusDB(version, pkgType)
 4.     └─base::do.call(rbind, unlist(url_list, recursive = FALSE))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BiocPkgTools.Rmd' failed with diagnostics:
second argument must be a list
--- failed re-building ‘BiocPkgTools.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocPkgTools.Rmd’

Error: Vignette re-building failed.
Execution halted