BioC experimental data: CHECK report for miRNATarget on linux1.bioconductor.org

Package: miRNATarget

Version: 1.8.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.8.0.tar.gz

StartedAt: 2015-10-24 15:08:25 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 15:09:10 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 44.5 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.024	0.000	0.023
HS_refseq_to_affy_hc_g110	0.004	0.003	0.008
HS_refseq_to_affy_hg_focus	0.030	0.000	0.031
HS_refseq_to_affy_hg_u133_plus_2	0.107	0.003	0.112
HS_refseq_to_affy_hg_u133a	0.068	0.000	0.068
HS_refseq_to_affy_hg_u133a_2	0.071	0.000	0.071
HS_refseq_to_affy_hg_u133b	0.029	0.003	0.033
HS_refseq_to_affy_hg_u95a	0.052	0.000	0.052
HS_refseq_to_affy_hg_u95av2	0.037	0.000	0.037
HS_refseq_to_affy_hg_u95b	0.025	0.000	0.025
HS_refseq_to_affy_hg_u95c	0.015	0.000	0.019
HS_refseq_to_affy_hg_u95d	0.01	0.00	0.01
HS_refseq_to_affy_hg_u95e	0.017	0.000	0.017
HS_refseq_to_affy_huex_1_0_st_v2	1.475	0.015	1.492
HS_refseq_to_affy_hugene_1_0_st_v1	0.046	0.004	0.049
HS_refseq_to_affy_hugenefl	0.014	0.000	0.014
HS_refseq_to_affy_u133_x3p	0.067	0.004	0.071
HS_refseq_to_agilent_cgh_44b	0.009	0.004	0.012
HS_refseq_to_agilent_wholegenome	0.072	0.000	0.072
HS_refseq_to_canonical_transcript_stable_id	0.07	0.00	0.07
HS_refseq_to_ccds	0.037	0.000	0.037
HS_refseq_to_codelink	0.039	0.000	0.038
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.002	0.000	0.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.002	0.000	0.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.001	0.000	0.002
HS_refseq_to_embl	0.79	0.00	0.79
HS_refseq_to_ensembl_exon_id	0.001	0.000	0.002
HS_refseq_to_ensembl_gene_id	0.048	0.003	0.052
HS_refseq_to_ensembl_peptide_id	0.046	0.000	0.046
HS_refseq_to_ensembl_transcript_id	0.055	0.000	0.055
HS_refseq_to_entrezgene	0.051	0.000	0.051
HS_refseq_to_hgnc_id	0.045	0.000	0.045
HS_refseq_to_hgnc_symbol	0.044	0.004	0.048
HS_refseq_to_hgnc_transcript_name	0.046	0.008	0.054
HS_refseq_to_illumina_humanht_12	0.055	0.000	0.055
HS_refseq_to_illumina_humanwg_6_v1	0.144	0.000	0.144
HS_refseq_to_illumina_humanwg_6_v2	0.045	0.000	0.045
HS_refseq_to_illumina_humanwg_6_v3	0.081	0.000	0.082
HS_refseq_to_interpro	0.122	0.000	0.121
HS_refseq_to_ipi	0.111	0.004	0.115
HS_refseq_to_merops	0.005	0.000	0.005
HS_refseq_to_pdb	0.278	0.004	0.282
HS_refseq_to_pfam	0.059	0.000	0.062
HS_refseq_to_phalanx_onearray	0.038	0.000	0.038
HS_refseq_to_protein_id	0.927	0.000	0.927
HS_refseq_to_refseq_dna	0.065	0.000	0.065
HS_refseq_to_refseq_genomic	0.000	0.000	0.002
HS_refseq_to_refseq_peptide	0.105	0.000	0.106
HS_refseq_to_rfam	0.003	0.000	0.003
HS_refseq_to_rfam_gene_name	0.001	0.000	0.002
HS_refseq_to_rfam_transcript_name	0.001	0.000	0.001
HS_refseq_to_smart	0.037	0.000	0.037
HS_refseq_to_tigrfam	0.006	0.000	0.005
HS_refseq_to_ucsc	0.098	0.000	0.099
HS_refseq_to_unigene	0.066	0.000	0.066
HS_refseq_to_uniprot_genename	0.045	0.000	0.044
HS_refseq_to_uniprot_genename_transcript_name	0.002	0.000	0.002
HS_refseq_to_uniprot_sptrembl	0.002	0.000	0.002
HS_refseq_to_uniprot_swissprot	0.001	0.000	0.001
HS_refseq_to_uniprot_swissprot_accession	0.002	0.000	0.002
HS_refseq_to_wikigene_id	0.001	0.000	0.002
HS_refseq_to_wikigene_name	0.175	0.000	0.175
MM_conv_id	0.002	0.000	0.003
MM_refseq_to_affy_mg_u74a	0.013	0.000	0.013
MM_refseq_to_affy_mg_u74av2	0.013	0.000	0.014
MM_refseq_to_affy_mg_u74b	0.010	0.000	0.011
MM_refseq_to_affy_mg_u74bv2	0.011	0.000	0.011
MM_refseq_to_affy_mg_u74c	0.004	0.000	0.004
MM_refseq_to_affy_mg_u74cv2	0.005	0.000	0.005
MM_refseq_to_affy_moe430a	0.026	0.000	0.027
MM_refseq_to_affy_moe430b	0.013	0.000	0.013
MM_refseq_to_affy_moex_1_0_st_v1	0.347	0.000	0.348
MM_refseq_to_affy_mogene_1_0_st_v1	0.038	0.000	0.039
MM_refseq_to_affy_mouse430_2	0.043	0.000	0.043
MM_refseq_to_affy_mouse430a_2	0.031	0.000	0.031
MM_refseq_to_affy_mu11ksuba	0.01	0.00	0.01
MM_refseq_to_affy_mu11ksubb	0.004	0.000	0.008
MM_refseq_to_agilent_wholegenome	0.056	0.000	0.057
MM_refseq_to_canonical_transcript_stable_id	0.050	0.004	0.054
MM_refseq_to_ccds	0.072	0.000	0.073
MM_refseq_to_codelink	0.028	0.000	0.028
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.001	0.000	0.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.002	0.000	0.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.000	0.004	0.001
MM_refseq_to_embl	0.376	0.000	0.379
MM_refseq_to_ensembl_exon_id	0.003	0.000	0.002
MM_refseq_to_ensembl_gene_id	0.037	0.000	0.038
MM_refseq_to_ensembl_peptide_id	0.035	0.000	0.035
MM_refseq_to_ensembl_transcript_id	0.036	0.000	0.036
MM_refseq_to_entrezgene	0.032	0.000	0.032
MM_refseq_to_fantom	0.195	0.004	0.199
MM_refseq_to_illumina_mousewg_6_v1	0.164	0.000	0.164
MM_refseq_to_illumina_mousewg_6_v2	0.041	0.000	0.041
MM_refseq_to_interpro	0.091	0.000	0.091
MM_refseq_to_ipi	0.001	0.000	0.001
MM_refseq_to_merops	0.003	0.000	0.003
MM_refseq_to_mgi_id	0.03	0.00	0.03
MM_refseq_to_mgi_symbol	0.031	0.000	0.030
MM_refseq_to_mgi_transcript_name	0.032	0.000	0.033
MM_refseq_to_pdb	0.059	0.000	0.060
MM_refseq_to_pfam	0.052	0.000	0.052
MM_refseq_to_phalanx_onearray	0.028	0.000	0.028
MM_refseq_to_protein_id	0.304	0.000	0.304
MM_refseq_to_refseq_dna	0.227	0.004	0.232
MM_refseq_to_refseq_peptide	0.062	0.000	0.062
MM_refseq_to_rfam	0.001	0.000	0.002
MM_refseq_to_rfam_gene_name	0.002	0.000	0.001
MM_refseq_to_rfam_transcript_name	0.001	0.000	0.001
MM_refseq_to_smart	0.020	0.000	0.024
MM_refseq_to_tigrfam	0.004	0.000	0.004
MM_refseq_to_ucsc	0.031	0.000	0.031
MM_refseq_to_unigene	0.041	0.000	0.041
MM_refseq_to_uniprot_genename	0.031	0.000	0.031
MM_refseq_to_uniprot_genename_transcript_name	0.002	0.000	0.002
MM_refseq_to_uniprot_sptrembl	0.002	0.000	0.002
MM_refseq_to_uniprot_swissprot	0.001	0.000	0.002
MM_refseq_to_uniprot_swissprot_accession	0.002	0.000	0.002
MM_refseq_to_wikigene_id	0.001	0.000	0.002
MM_refseq_to_wikigene_name	0.03	0.00	0.03
TBL2	0.848	0.040	0.889
TBL2_HS	1.452	0.056	1.510
TBL2_MM	0.756	0.036	0.793
conv_id	0.002	0.000	0.003
id_conv	0.028	0.000	0.028